Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01950 ATGGCCTCTTCACGCCCTACCAATGTGGGAATCCTTGCCATGGACATATACTTCCCTCCAACCTGCGTCACCCAGGAAGCTTTAGAGGGTCATGATGGGGTGAGCAAAGGGAAATACACTATTGGGCTTGGACAGGATTGCATGGCTTTCTGCTCTGAGGTTGAAGATGTTATCTCAATGAGCTTGACAGTAGTTGCTTCACTTCTTGAAAAATTTAATGTTGATCCAAAGCAAATTGGACGCTTGGAGGTTGGAAGTGAAACTGTGATTGATAAGAGCAAATCCATTAAGACCTTTCTGATGCAAGTTTTTGAGGCGAGTGGTAATACTGACATTGAAGGTGTTGATTCAACAAATGCGTGCTATGGAGGGACGGCAGCTTTGTTCAACTGTGTGAATTGGGTGGAGAGTAGTTCATGGGATGGACGTTATGGACTTGTTGTATGTACAGACAGTGCGGTATATGCAGAAGGACCTGCTCGTCCCACTGGAGGAGCAGCTGCAATTGCCATGCTTGTAGGGCCAGATGCTCCTATTGCTTTTGAAAGCAAACTCAGAGGCAGTCACATGTCTCATGCATATGACTTTTACAAGCCAAATCTTGCTAGTGAATATCCAGTTGTTGATGGAAAACTCTCACAGACCTGTTATCTCATGGCACTTGATTCGTGTTATCGGATTTTATGTGAGAAATTTGAAAAATTGGAGGGGAGGCCTTTTTCAATATCAGATTCTGATTATTTTGTGTTTCATTCTCCATATAACAAGCTTGTGCAGAAAAGTTTTGGCCGGCTATACTTTAATGACTTCATGAGAAATCTCAGTTTTGTTGATGAAGCTGCCAGGGAGACCCTTGCACCATATGCTTCCTTATCCGGTGATGAGAGTTATCAAAGTCGTGATCTTGAAAAGGCAAATCAGCAAGCTGCCAAACATGTATATGATGCAAAGGTGCAGCCCAGCACACTAATCCCAAAGCAAGTTGGTAACATGTACACTGCATCTCTTTATGCAGCATTTGCCTCTCTTCTTCATAATAAAAACACTTCATTGGTGGGTAAAAGAGTAGTTTTGTTTTCATATGGAAGTGGTTTAACAGCTACAATGTTCTCCCTCCGCCTTCAAGAAGGTCAGCATCCGTTTAACTTGTCAAACATTGTAGCCGTGATGAATGTTTCGGACAAGTTGAAGCAGAGACTTGAGATTCGTCCTGAAGAGTTTGTGGAAACATTGAAGATCATGGAGCACCGTTATGGGGGTAAGGACTTTGTGACAAGCAAGGACTGCAGCTGCTTGCCTCCAGGAACCTTCTATCTCACCAGTGTTGATTCTATGTACAGGAGATACTATGCCAAGAAGGACAAGGTGATTGCATAG 1377 0.4321 MASSRPTNVGILAMDIYFPPTCVTQEALEGHDGVSKGKYTIGLGQDCMAFCSEVEDVISMSLTVVASLLEKFNVDPKQIGRLEVGSETVIDKSKSIKTFLMQVFEASGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYRILCEKFEKLEGRPFSISDSDYFVFHSPYNKLVQKSFGRLYFNDFMRNLSFVDEAARETLAPYASLSGDESYQSRDLEKANQQAAKHVYDAKVQPSTLIPKQVGNMYTASLYAAFASLLHNKNTSLVGKRVVLFSYGSGLTATMFSLRLQEGQHPFNLSNIVAVMNVSDKLKQRLEIRPEEFVETLKIMEHRYGGKDFVTSKDCSCLPPGTFYLTSVDSMYRRYYAKKDKVIA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01950 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 5 178 IPR013528 -
Vimu8g01950 458 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 453 - -
Vimu8g01950 458 CDD init_cond_enzymes 8 372 - -
Vimu8g01950 458 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Vimu8g01950 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vimu8g01950 458 NCBIfam hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
Vimu8g01950 458 Gene3D - 2 454 IPR016039 GO:0016746
Vimu8g01950 458 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 4 454 - -
Vimu8g01950 458 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Vimu8g01950 458 SUPERFAMILY Thiolase-like 179 451 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01950 Vimu-Chr8 25262612 25266520 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01950 K01641 - gmx:100777679 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01950 8 25262612 25266520 Vimu8g01950 8 25262612 25266520 ECH