Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01918 ATGGGAAAGAAAGAAGGAAAGAAAAGAAAGGAGAGAATCCCAGAGACAGAGGTTCTTCCCTCTTCATTCTTTCATTTTGCTTCTCCTAACACCACACAAACCAAACCCCTCTCCACACTCCACCCTCACTCCTTCTCCGGGTCAATGACCCACGCCCGAAAGCCCACCAAGCCCAACCCCCAGCCCCTCCAGGCCCACAACCCTTCATTCTCCACCACCGGCATGAAACTCATCGTCCCTCTCCAGGGCGTCGTCCAGGGCCGCGGAGGGCTTCTCCTCGGAACCCTCGTTCCCTGCGCTCTCTTCTACTTCCTCCAGCTCTACCTCAAACGACGCCGTTCCAACTTCTCCCCTCCCTCCCCCTCCTCCGAGCCCACCCTCCCCCGAACCTCCTCCCGCTCCAATTTGTCCACACGTGGCTCCATTTCCCGGGTTCGCCTCTCCAAACTCGCCACGCAGATTTCCAGGCCCGACGACTCCCTCTACTACGTCGGCTTGGAGAGGGCTTCACGGGATCCCTACCACGCTGTTGACAATCCACATGGGATTATTCAGCTGGGCTTGTCGGACAACAAGCTGTGCTTCGATTTGATAGGGGAATGGGTGGCGCGGAACTTGGAGGGGACGATGAGTGGCGGTGTTGATTTGGGTATTAACGGGATTGCACCGTATCAGACGTTTGATGGGGTGATGGAATTGAAAATGACACATGGTAGTCCTGGAGCATGCAATGATTTCTCATCAGTGGGGGTTGGGAGTAGAGTGTTTGAATTCACAGGGGAACTTGCATGTGTACATTATCATTCTGTGTTGTCGTTTAAGGCCTTGTCAGATTTTATGCACCAGGTGATGGGGGAATCAGTGAAATTTGACCCATATAATATGGTTCTAACAGCTGGAGCAACTCCTGCAATCGAGATATTGTCCTACTGTTTGGCAGACCATGGGAATGCATTCCTTGTCCCTACACCGTATTATCCAGGGGATGTAAGATGGCGTCCAGGGGTAGACCTAATACCTGTTCACTGTCGCAGTACTGACAATTTCAATCTAAATATCACTGCTCTTGATCAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAATTCGTGGAATTCTAATTTCCAACCCTTCAAATCCCGTTGGCAATATTTTGACACAAGACATGCTATACAGTCTTCTGGACTTTGCTGAAGACAAAAACATTCATATCATTGTTGATGAAGTATATGCAGGCTCCACGTACGGAAGTGAGAAGTTTGTGAGTCTAGCTGAAGTTCTTGATTCAGATATAGACAAAAGTCGGTTTCACATCGTATATTCCCTGTCAAAAGACCTATCTCTTGCCGGATTCAGAGTTGGGGTTATATGTTCATTCAACGACAGTGTTTTGGCTGCTGCCAAGAAGTTGACTAGATTTTCCTCTATATCTGCTCCGACCCAGAGGTTAGTTACTTCAATGCTTTCAGATAAAAGATTTATTCGGGAGTATTTAGAAACCAACCGGAAAAGAATACGACAAGTGCGTGATGAATTTGTGGATTGTTTAAGTAAACTAGGAATCAAGTGTGCCAAGAGCAGTGCTGGTATGTTCTGTTGGGCTGATATGAGTGGATTGATACGACCATACAGTGAAAAAGGGGAAATTGAGTTGTGGGAGAAGTTTTTAAGTATTGCTAAGATCAGTATAACTCCTGGATCAGCCTGCCATTGCATAGAACCAGGATGGTTTCGAATTTGTTTTACTACCATAACATTAGAGGAGGTCCCTCTGGTTATTGAACGAATTAGGAGAGTTGTTGAAAGTTGTAATTCTTCTAGTTGA 1827 0.4702 MGKKEGKKRKERIPETEVLPSSFFHFASPNTTQTKPLSTLHPHSFSGSMTHARKPTKPNPQPLQAHNPSFSTTGMKLIVPLQGVVQGRGGLLLGTLVPCALFYFLQLYLKRRRSNFSPPSPSSEPTLPRTSSRSNLSTRGSISRVRLSKLATQISRPDDSLYYVGLERASRDPYHAVDNPHGIIQLGLSDNKLCFDLIGEWVARNLEGTMSGGVDLGINGIAPYQTFDGVMELKMTHGSPGACNDFSSVGVGSRVFEFTGELACVHYHSVLSFKALSDFMHQVMGESVKFDPYNMVLTAGATPAIEILSYCLADHGNAFLVPTPYYPGDVRWRPGVDLIPVHCRSTDNFNLNITALDQAFSQARKRGVKIRGILISNPSNPVGNILTQDMLYSLLDFAEDKNIHIIVDEVYAGSTYGSEKFVSLAEVLDSDIDKSRFHIVYSLSKDLSLAGFRVGVICSFNDSVLAAAKKLTRFSSISAPTQRLVTSMLSDKRFIREYLETNRKRIRQVRDEFVDCLSKLGIKCAKSSAGMFCWADMSGLIRPYSEKGEIELWEKFLSIAKISITPGSACHCIEPGWFRICFTTITLEEVPLVIERIRRVVESCNSSS 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01918 608 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 442 455 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vimu8g01918 608 Pfam Aminotransferase class I and II 274 597 IPR004839 GO:0009058|GO:0030170
Vimu8g01918 608 Gene3D Aspartate Aminotransferase, domain 1 492 596 IPR015422 GO:0003824
Vimu8g01918 608 Gene3D Aspartate Aminotransferase, domain 1 146 211 IPR015422 GO:0003824
Vimu8g01918 608 MobiDBLite consensus disorder prediction 115 140 - -
Vimu8g01918 608 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 436 460 - -
Vimu8g01918 608 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 468 491 - -
Vimu8g01918 608 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 186 212 - -
Vimu8g01918 608 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 147 602 - -
Vimu8g01918 608 MobiDBLite consensus disorder prediction 29 67 - -
Vimu8g01918 608 SUPERFAMILY PLP-dependent transferases 156 602 IPR015424 -
Vimu8g01918 608 CDD AAT_like 274 599 - -
Vimu8g01918 608 Gene3D - 274 491 IPR015421 GO:0003824
Vimu8g01918 608 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01918 Vimu-Chr8 24828214 24831797 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01918 K14270 - gmx:100800539 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01918 8 24828214 24831797 Vimu8g01918 8 24828214 24831797 ECH