Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01915 ATGAGTTTCGCGGCGTACAAGATGATGCAGTGGTCCACTGGAATCGACAACTGCGCCGCCGGCTTCCTCACGCACTCACGTGCCGACTCCGTTCCGCTCCAGGCCGACGACCTAGACGCCGAGTGGTCCTCCCGCCCTAGCCGCGTCGGCCCCCTCCCAAACCTCGTCGTCACCGCCGCCAACGTCCTCGAGGTTTACGCCGTACGCATCCAAGAGGACCAGCCGACCAAGGCCACCGACCCCCGCCGCGGTACTCTCCTTGATGGAATCGAGGGAGCCTCACTTGAGCTCGTGTGCCACTACAGGTGTGACTTGATTTCTGTAATGCCCGAGGCAGCTGGTTTGCTGCTACAGAAAACCCGATTTTCCAAAGAATCCACAGCTTTCCGCCAAGGCCATTCATCGATAACACTGAGTACACCTTTTACTGAATTTTCTGATGGAGTTGAGTGTGGAGCATCTTATGCCGCAATGTTGCATGGTAATGTTGAAACCATGGCCGTGTTGAGCATCGGAGGTGGTGATGCTTCTAGGAAGAGAGACTCTATCATCTTAACTTTTGCAGATGCAAAGATTTCAGTTCTCGAGTATGATGATTCTATTCATGGACTTCGAACGAGTTCTTTACATTGTTTTGAGGGTCCAGAGTGGCTTCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCGGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGTGGAGCTCTTATATATGATTTGCAAATGATAATACTAAAGGCCACTCAGGCTGGTTCTGGTTTAGTTGGGGACGATGATGCCTTGGGATTTTCAGGAGCAGTTGCTGCCCGAGTTGAGTCATCTTATATGATAAACCTCCGTGACTTGGATATGAGGCATGTAAAAGATTTTACGTTTGTTCATGGCTACATCGAACCAGTAATGGTTATTTTACATGAACGTGAACTCACTTGGGCTGGGCGTGTCTCATGGAAGCACCATACTTGCATGATATCAGCACTTAGTATCAGCCTTATGAATCTCCCCCACGATGCATACAAGCTTCTTGCTGTGCCCTCGCCAATAGGTGGTGTTCTTGTAATAGGTGCTAACACTGTTCATTATCACAGTCAGTCTGCTTCTTGTTCATTGGCCTTGAACAGCTATGCTGTTTCACCTGACAATAGTCAAGAGATACCGAGATCAAGTTTTAACGTGGAGCTTGATTCTGCCAATGCAACTTGGTTGTTGAGTGATGTGGCCTTGCTGTCTACAAAAACTGGCGAACTGCTATTGCTTACACTTGTTTATGATGGAAGGTATGCTGCTTTTACTTTTTATCTTCCTCATTCACATTCTTTATGTTTGCGTGTGGGTGGTGGTGTTGACGTTGGACAGCTGTGTAATAGTTCTTGTGGAGCTTGTGTGGTGGTTGGTTGTGCGGGGATGGTGTCATATTTCCTGTGTTGTGATGGTTGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACGACCATTGGGAATTGTCTATTTTTTCTCGCCAGTCGGTTAGGGGATAGTATGTTGGTGCAATTTTCTTGTGGATCTGGTGGTTCATTGTTGTCATCCAATTTAAAAGAAGAGGTCGGTGATATTGAAGTGGATGCTCCGTCGAAGAGATTGCGGAGGTCACCTTCTGATACTTTGCAAGACATGGTTAGTGGTGAAGAGCTCTCCTTGTTTGGGTCTGCTCCAAATAGAACAGAATCAGCTCAGAAGTCCTTCTCGTTTGCTGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTCTCATATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAACTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTCTGCGGCAATCAATTCGTCCAGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGTTCTCATAATACTGATTCTTCTAAGCTGGCTGATGATGATGACGAGTATCATGCCTATCTTATCATTAGTTTGGAGGCTCGTACAATGGTACTAGAAACAGCCGATCTTCTGAGTGAAGTTACTGAAAGTGTGGACTATTATGTTCAAGGAAAAACACTTGCTGCGGGAAATTTATTTGGAAGGCGTCGAGTTATCCAAGTCTATGAACGTGGGGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGATGTAACCTTTGGAGCTTCAAATTCAGAATCTGGTTCTGCTTCTGAGAGTGCTATAGCACTTTCTGTTTCTATAGCCGATCCATTTGTCTTACTCAGAATGAGTGATGGAAGTGTTCGTCTTCTGATTGGAGATCCTATTACCTGCACAATTTCTGTCACTTCACCAGCTTCATTCGAGAGTACCAAGGGATCAGTTTCTTCATGCACACTGTACCATGATAAAGGACCCGAGCCTTGGCTGAGGAAGACTAGTACTGATGCGTGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGTACTGATGGTGCTGCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTTTGATAATGGCAACCTTGAAATATTTGATGTCCCCAATTTCAATTGTGTTTTTTCTGTGGAAAATTTCATGTCTGGAAAAAGCCATCTTGTTGATGCTCTGATGAAAGAAGTAGTAAAAGATTCTAAAATTGGGGATAGAGATGGAGTGGTCAGCCAAGGGAGGAAGGAAAATGTACCAGATATGAAGGTTGTAGAGTTGGCTATGCAGAGATGGTCTGGGCAACATAGCCGTCCATTTCTTTTTGGGACTTTGAGTGATGGAACTATTCTTTGTTACCATGCTTATCTTTATGAAAGTCCAGATGGTACTTCTAAAGTTGAGGATTCAGCATCAGCAGGAGGATCCGTTGGCCTTGGCACTACCAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGCATATTCCAGGGAGGAGACATCTAATGGATCACCTCGTCAACAAATTACTATTTTTAAGAATATTGGTAATTATCAAGGATTCTTCTTATCTGGGTCAAGACCAGCTTGGGTCATGGTGTTGAGGGAACGACTTCGTGTTCATCCACAGCTATGTGATGGCTCTATTGTTGCTTTTACTGTACTTCACAACGTGAACTGCAATCATGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGTTCAAACTATGACAGCTACTGGCCTGTACAAAAAATTCCACTAAAAGCCACTCCACACCAAGTAACATATTTTGCTGAGAAGAATTTATATCCACTTATTGTCTCGTTTCCAGTTCTTAAGCCACTAAATCAAGTTATTTCTTTGGTTGACCAAGATGTCAACCATCAGAATGAGGGTCAGAATATGAATTCTGATGAGCAAAATCGCTTTTATCCTATTGATGAATTTGAGGTCCGAATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAAGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTCACTGTGAGGATGGTTACGCTGCTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGGACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGCATCCTCCTGTTTTCTTTGGGGAAAAATACTGATAATCCACAATCTCTGGTTTCAGAGGTGTATTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAGGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGATGCACCGCCATTACATGTTGTGAGCTTAAATATTGTAAAGAACTTCATCCTTATTGGCGACATCCATAAAAGCATATACTTTCTCAGTTGGAAAGAGCAGGGTGCTCAATTGAGTTTATTAGCCAAGGATTTTGCTTCTCTCGATTGTTTTGCAACAGAATTTTTGATTGATGGAAGTACTCTTAGTCTCATGGTTTCAGATGATAAAAAAAATATCCAGATTTTTTACTATGCGCCAAAGATGTCCGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCTCATGTGACTAAATTCTTAAGATTGCAAATGCTATCCACTTCGGATAGAGCTGGTTCAGTTCCAGGCTCAGATAAAACAAATCGTTTTGCGTTATTATTTGGGACCTTGGATGGCAGTATTGGCTGCATTGCCCCTCTTGATGAAATCACATTTCGTAGACTCCAGTCTTTGCAGAGAAAACTTGTTGATGCTGTAGCCCATGTTGCTGGCCTGAACCCCAGAGCTTTCAGACAATTTCGGTCAAATGGAAAGGCTCATAAACCTGGCCCTGACAGTATAGTTGACTGTGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCATCAGGTTGGGACAACTCGATCACAAATTCTCTCAAATCTAAGTGATCTGTCTCTTGGAACAAGCTTCTTGTAA 4632 0.4335 MSFAAYKMMQWSTGIDNCAAGFLTHSRADSVPLQADDLDAEWSSRPSRVGPLPNLVVTAANVLEVYAVRIQEDQPTKATDPRRGTLLDGIEGASLELVCHYRCDLISVMPEAAGLLLQKTRFSKESTAFRQGHSSITLSTPFTEFSDGVECGASYAAMLHGNVETMAVLSIGGGDASRKRDSIILTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGALIYDLQMIILKATQAGSGLVGDDDALGFSGAVAARVESSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISLMNLPHDAYKLLAVPSPIGGVLVIGANTVHYHSQSASCSLALNSYAVSPDNSQEIPRSSFNVELDSANATWLLSDVALLSTKTGELLLLTLVYDGRYAAFTFYLPHSHSLCLRVGGGVDVGQLCNSSCGACVVVGCAGMVSYFLCCDGWVVQRLDLSKSKASVLSSGITTIGNCLFFLASRLGDSMLVQFSCGSGGSLLSSNLKEEVGDIEVDAPSKRLRRSPSDTLQDMVSGEELSLFGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNTDSSKLADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVTFGASNSESGSASESAIALSVSIADPFVLLRMSDGSVRLLIGDPITCTISVTSPASFESTKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEIFDVPNFNCVFSVENFMSGKSHLVDALMKEVVKDSKIGDRDGVVSQGRKENVPDMKVVELAMQRWSGQHSRPFLFGTLSDGTILCYHAYLYESPDGTSKVEDSASAGGSVGLGTTNVSRLRNLRFVRVPLDAYSREETSNGSPRQQITIFKNIGNYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDVNHQNEGQNMNSDEQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKNTDNPQSLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFASLDCFATEFLIDGSTLSLMVSDDKKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGSVPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVAHVAGLNPRAFRQFRSNGKAHKPGPDSIVDCELLCHYEMLPLEEQLEIAHQVGTTRSQILSNLSDLSLGTSFL 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01915 1543 FunFam cleavage and polyadenylation specificity factor subunit 1 1065 1450 - -
Vimu8g01915 1543 Gene3D - 1065 1450 IPR015943 GO:0005515
Vimu8g01915 1543 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 25 1529 - -
Vimu8g01915 1543 Pfam CPSF A subunit region 1176 1508 IPR004871 GO:0003676|GO:0005634
Vimu8g01915 1543 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 181 789 IPR018846 -
Vimu8g01915 1543 Gene3D - 51 536 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01915 K14401 - gmx:100801803 2577.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01915 8 24779001 24802859 Vimu8g01915 8 24779001 24802859 ECH