Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01913 GAACAAAGTAACCCTTCCCAAAACCTCACTCTCTTTCTTTTCTCCCTTCATCTCTTTCCAATGGCTTCCATCCCCACACTTTCTCCATCCTTGACCAAACTCTTCCCTCACTCCACACCTCATTCCAACTCCAATCACTGCACTCTTCCTCCCACCTCTCTCTTCGGCACCAGGATCACCCTCCAACGCGCCACCTCATCATCATGTTCTCTTCCCAATACCAACTGTCGTTCCACGTCAGCAACTGTGTCGTTTAGCCTCCCCTCCCCGAAACCCCTTTCCGATGCGCCAGAGAAAACCCCTAAGTGGTCGGCGAGGGCTATAAAATCGTTTGCAATGGCAGAATTGGAGGCGAGGAAGATAAAGTTTCCCAACACGGGAACCGAGGCCATTCTGATGGGGATTTTGGTCGAAGGAACAAGTAGAGCTGCTAAATTCTTAAGAGCCAATGGAATTACTCTTTTCAAAGTACGTGACGAAACTTTGAATCTACTTGGCAAATCTGACTTGTATTTTTTCAGCCCTGAACATCCTCCTTTGACTGAACCAGCCCAGTTAGCCCTTGAATGGGCTATTCAGGAGAAACTAAAATCAGGTGAAGGAGGAGAAATAAACGTTACACATATGCTTCTAGGAATTTGGTCACAGAAAGAATCAGCAGGTCAAATAATTCTGGCTTCTCTAGGTTTCGATGATGAAAAAGCCAAAGAACTTGCTAAAACAATTGATGGAGATGTTGATTTGAGTTTCAAAAGGCAAACATAA 765 0.4523 EQSNPSQNLTLFLFSLHLFPMASIPTLSPSLTKLFPHSTPHSNSNHCTLPPTSLFGTRITLQRATSSSCSLPNTNCRSTSATVSFSLPSPKPLSDAPEKTPKWSARAIKSFAMAELEARKIKFPNTGTEAILMGILVEGTSRAAKFLRANGITLFKVRDETLNLLGKSDLYFFSPEHPPLTEPAQLALEWAIQEKLKSGEGGEINVTHMLLGIWSQKESAGQIILASLGFDDEKAKELAKTIDGDVDLSFKRQT 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01913 254 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 29 250 IPR044217 -
Vimu8g01913 254 Pfam Clp amino terminal domain, pathogenicity island component 203 240 IPR004176 -
Vimu8g01913 254 Pfam Clp amino terminal domain, pathogenicity island component 124 166 IPR004176 -
Vimu8g01913 254 ProSiteProfiles Clp repeat (R) domain profile. 97 245 IPR004176 -
Vimu8g01913 254 Gene3D - 102 249 IPR036628 -
Vimu8g01913 254 SUPERFAMILY Double Clp-N motif 102 244 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01913 Vimu-Chr8 24769826 24772775 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01913 - - var:108344079 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01913 8 24769826 24772775 Vimu8g01913 8 24769826 24772775 ECH