Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01629 ATGGATGTGGCTGCTGATGATGCCTTTGATGAACAGTGTGATTACCTTTTCAAAGCTGTTCTGATAGGAGACTCAGGCGTTGGGAAGACAAATCTGATATCAAGGTTTGCAAAAGATGAATTCAGGTTAGATTCGAAGCCAACCATAGGTGTTGAATTTGCTTACAGAAACATCAAAGTCATCGACAAACTCATCAAAACACAGATATGGGACACTGCCGGCCAAGAGAGGTTTAGGGCTATCACAAGCTCATATTACAGAGGAGCCTTGGGAGCAATGCTGGTGTATGACATAACCAAGCGAGCAACTTTTGTGAATGTAAGAAAATGGCTTCGTGAGTTGAGAGAGTTTGGAGGAGATGACATGGTGGTTGTTTTGGTGGGAAACAAATCTGATTTGGCGCAATCAAGGGAAGTTGAGAAAGAAGAAGGAAAAGGGTATGCAGAGACAGAAAGGTTGTGTTTCATGGAAACCTCTGCTCTGCAGAATCAGAATGTTGAGGAAGCATTCTTAGAAATGATCACCAAGATTCATGACATCATAAGTCACAAAAGTTTGGAAACCAAAATCAATGGCACGTCATTAAATCTTCCCAGTGGCAAGGAAATCCATATAGCTGATGAAGTCACTGCTACTAAACAACCTAATTATTGCTGTTCATGA 663 0.4133 MDVAADDAFDEQCDYLFKAVLIGDSGVGKTNLISRFAKDEFRLDSKPTIGVEFAYRNIKVIDKLIKTQIWDTAGQERFRAITSSYYRGALGAMLVYDITKRATFVNVRKWLRELREFGGDDMVVVLVGNKSDLAQSREVEKEEGKGYAETERLCFMETSALQNQNVEEAFLEMITKIHDIISHKSLETKINGTSLNLPSGKEIHIADEVTATKQPNYCCS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01629 220 ProSiteProfiles small GTPase Rho family profile. 10 178 - -
Vimu8g01629 220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 189 IPR027417 -
Vimu8g01629 220 SMART rab_sub_5 17 180 - -
Vimu8g01629 220 ProSiteProfiles small GTPase Ras family profile. 11 220 IPR001806 GO:0003924|GO:0005525
Vimu8g01629 220 NCBIfam small GTP-binding protein domain 16 170 IPR005225 GO:0005525
Vimu8g01629 220 SMART ran_sub_2 22 217 - -
Vimu8g01629 220 Gene3D - 9 219 IPR027417 -
Vimu8g01629 220 SMART ras_sub_4 14 180 - -
Vimu8g01629 220 PANTHER DRAB11-RELATED 11 189 - -
Vimu8g01629 220 FunFam ras-related protein RABA5a 9 219 - -
Vimu8g01629 220 CDD Rab11_like 14 178 - -
Vimu8g01629 220 Pfam Ras family 18 178 IPR001806 GO:0003924|GO:0005525
Vimu8g01629 220 PRINTS Transforming protein P21 ras signature 17 38 - -
Vimu8g01629 220 PRINTS Transforming protein P21 ras signature 58 80 - -
Vimu8g01629 220 PRINTS Transforming protein P21 ras signature 40 56 - -
Vimu8g01629 220 PRINTS Transforming protein P21 ras signature 120 133 - -
Vimu8g01629 220 PRINTS Transforming protein P21 ras signature 155 177 - -
Vimu8g01629 220 ProSiteProfiles small GTPase Rab1 family profile. 12 219 - -
Vimu8g01629 220 SMART rho_sub_3 19 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01629 Vimu-Chr8 22133332 22136780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01629 K07976 - gmx:100815793 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01629 8 22133332 22136780 Vimu8g01629 8 22133332 22136780 ECH