Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01597 ATGTCGCTCCACGGAAGCGACCGCCGCGACACGTCGAGCGCCGGCGGAAACGGCATGGTGGCGGCGAGCCTGAGGCTGCGGCTGAACCCTAACAAGGAGCACAAGCCAGATGGCTACGAGGACCTGCAGTTGGATTTCAGCCCTAACATCTTCAGTTCCTTGGAGAGGTACCTCCCTCCGAGCATGCTCAACGTGCCTCGTGACGATAAGGCCAAGTTCATGCGCGAGATTCTGCTCAAGTATCTACCCCTTGGGGAACGCAGCAGATCTCAAAAGCATAGAGAATACAGACAGAAGATAATAGAAAATTATCAGCCTCTGCATCGGGAGTTGTACTCTGTTGATCCTGCTACATTCTTCGTTCCCTCATTTCTGAGAGCAATTAATGATAATACTGAGCAAAGCTTTAGAAGTATAATGTCTGAGCCCTCTCCTGGCATTTTTATATTTGACATATTTCAGACCAACTTTTGTGAGTTATTGCTATCTGAGATTGAAAATTTTGAGAAGTGGGTGACTGAAACAAAGTTTCGGATCATGCGTCCCAATACAATGAATAAATATGGTGCAGTACTTGATGACTTTGGACTTGAAACAATGCTTGACAAGCTTATGGAAGGTTTTATTCGTCCTTTATCCAGAGTCTTATTTGCGGAAGTTGGTGGGGCAACCCTGGATTCTCATCATGGTTTTGTTGTAGAATATGGTAAAGATAGAGATGTTGACTTGGGTTTCCATGTGGATGACTCAGAAGTAACCTTGAATGTTTGTTTGGGTAAGCAATTTTCTGGAGGGGAATTGTTTTTCCGGGGCATACGATGTGAGAAACATGTAAATACTGGAACTCATTCAGAGGAGATATTTGATTATTCTCATGTTCCTGGACGAGCTGTGCTTCATCGTGGTCGACATCGCCATGGTGCTAGAGCTACAACATCCGGCAATCGGGTCAACCTACTTCTGTGGTGCAGAAGGGAGATGAAACGGTATCAAAAAGATTTCTCCAGCTGGTGTGGCGAGTGCAGTCGTGAGAAAAAGGAAAGGCAACGCTCAACAATTGCTGCTACCAAATTGGAGTTGTTCAGGAGGGAAGGTGAATCCACTGCATAA 1110 0.4568 MSLHGSDRRDTSSAGGNGMVAASLRLRLNPNKEHKPDGYEDLQLDFSPNIFSSLERYLPPSMLNVPRDDKAKFMREILLKYLPLGERSRSQKHREYRQKIIENYQPLHRELYSVDPATFFVPSFLRAINDNTEQSFRSIMSEPSPGIFIFDIFQTNFCELLLSEIENFEKWVTETKFRIMRPNTMNKYGAVLDDFGLETMLDKLMEGFIRPLSRVLFAEVGGATLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFSGGELFFRGIRCEKHVNTGTHSEEIFDYSHVPGRAVLHRGRHRHGARATTSGNRVNLLLWCRREMKRYQKDFSSWCGECSREKKERQRSTIAATKLELFRREGESTA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01597 369 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 226 325 IPR005123 -
Vimu8g01597 369 SMART p4hc 145 324 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vimu8g01597 369 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 22 358 - -
Vimu8g01597 369 Gene3D q2cbj1_9rhob like domain 145 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01597 Vimu-Chr8 21944987 21952041 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01597 - - gmx:100816390 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01597 8 21944987 21952041 Vimu8g01597 8 21944987 21952041 ECH