Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01497 ATGGCGATGGTGGACCAGCCTCTGTATCCGATTGCCGTATTGATCGATGAGCTGAAGAACGAGGATATTCAGCTGCGGCTAAACTCGATCCGACGGCTCTCCACGATCGCGCGGGCGCTCGGCGAGGAGCGAACGCGGAAGGAGCTGATTCCGTTTCTCAGCGAGAACAACGACGATGACGATGAAGTGCTTCTCGCAATGGCTGAAGAATTGGGCGTGTTCATTCCCTACGTGGGAGGCGTGGAACACGCCAACGTGCTTCTTCCTCCGTTGGAGACGCTCTGCACCGTTGAGGAAACTTGCGTCAGAGACAAATCGGTGGAGTCGCTGTGTAGGATTGGGGCTCAGATGAAGGAGCAGGATTTGAGGCTGGCTGCTGGCGAGTGGTTCACAGCACGAGTTTCTTCTTGCGGTTTGTTCCATATTGCTTACCCTAGTGCGCCGGAGGTGGTGAAGACTGAACTGAGAACCATATATGGCCAGCTCTGTCAAGATGATATGCCGATGGTTAGGAGATCTGCTGCTACAAACTTGGGAAAGTTTGCTGCCACCGTTGAAGCTCCTCACTTGAAATCAGACATCATGTCTGTGTTTGAGGATCTTACACAAGATGATCAAGATTCTGTTCGGCTGCTTGCTGTTGAGGGTTGTGCAGCTCTAGGAAAATTGTTGGAGCCTCAGGATTGTGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGGACAAGTCATGGCGTGTTCGTTACATGGTTGCAAATCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGATCCCACCAGGTCAGAATTGGTTCCTGCCTATGTTAGGCTGCTGCGTGATAATGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTCTCCCGCATTCTAAGTCCTGAACTTGCCATTCAGCATATTCTACCCTGTGTGAAGGAGCTATCAAGCGATTCATCTCAACATGTTCGCTCTGCATTGGCTTCCGTTATAATGGGAATGGCACCAGTGTTGGGGAAGGATGCAACAATTGAGCAACTCCTTCCTATTTTCCTTTCTCTTTTGAAAGACGAATTTCCTGATGTCAGACTAAATATTATCAGCAAGCTTGATCAAGTGAATCAGGTTATTGGCATCGATTTGTTATCTCAGTCTCTGTTGCCAGCTATTGTTGAGCTTGCTGAGGATCGGCACTGGAGAGTTCGACTTGCTATCATAGAATATATACCCTTATTGGCAAGCCAATTGGGTGTTGGGTTTTTTGATGACAAGCTCGGTGCTCTTTGCATGCAATGGCTAAAGGACAAGGTTTGTGAAGCAATGGCAATTATTTTCAATGGGTTCTGTGAAATAATGAAAGAGATGAGGAGAAATTTCCCTTGTGTTAAATACACACATAGGGTTCTCTCTTTATAA 1425 0.4716 MAMVDQPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKSVESLCRIGAQMKEQDLRLAAGEWFTARVSSCGLFHIAYPSAPEVVKTELRTIYGQLCQDDMPMVRRSAATNLGKFAATVEAPHLKSDIMSVFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRSELVPAYVRLLRDNEAEVRIAAAGKVTKFSRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVCEAMAIIFNGFCEIMKEMRRNFPCVKYTHRVLSL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01497 474 ProSiteProfiles HEAT repeat profile. 233 271 IPR021133 -
Vimu8g01497 474 ProSiteProfiles HEAT repeat profile. 311 349 IPR021133 -
Vimu8g01497 474 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 459 - -
Vimu8g01497 474 Pfam HEAT repeats 352 439 - -
Vimu8g01497 474 ProSiteProfiles HEAT repeat profile. 272 310 IPR021133 -
Vimu8g01497 474 ProSiteProfiles HEAT repeat profile. 350 388 IPR021133 -
Vimu8g01497 474 ProSiteProfiles HEAT repeat profile. 389 427 IPR021133 -
Vimu8g01497 474 SUPERFAMILY ARM repeat 8 459 IPR016024 -
Vimu8g01497 474 ProSiteProfiles HEAT repeat profile. 155 193 IPR021133 -
Vimu8g01497 474 ProSiteProfiles HEAT repeat profile. 194 232 IPR021133 -
Vimu8g01497 474 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 468 - -
Vimu8g01497 474 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Vimu8g01497 474 Pfam HEAT repeat 233 261 IPR000357 GO:0005515
Vimu8g01497 474 Gene3D - 2 472 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01497 Vimu-Chr8 20968078 20974013 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01497 K03456 - gmx:100799440 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01497 8 20968078 20974013 Vimu8g01497 8 20968078 20974013 ECH