Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01493 CATGTTCTTCCTTGCAGATTGTATTTCACTATTTTACGTGTTGGAAATCCTCCAAGAAGTTATTTTCTTGATGTGGATACAGGGAGTGACTTAACCTGGATGCAGTGTGATGCTCCTTGCACAAGTTGTGGAAAGGGAGCTCATGCCCTATACAAGCCCACAAGATCCAATGTAGTATCATCCATGGACTCTCTCTGCTTGGATGTTCAGAAAAATCAGAAGAATGGGCATCACGAAAGTTTGCAACAGTGTGACTATGAAATTGAATATGCAGATAGGAGTTTTTCCTTGGGAGTTCTTATTAGAGACGATCTTCATCTTGTATCTAAAAATGGATCCAAAATCAAGCTAAATTTTGTTTTTGGGTGTGGATATGATCAAGAAGGCTTACTTTTGAACACATTGGCAAAGACAGATGGAATCATGGGACTGAGCAGGGCAAAAGTGAGCCTACCTAACCAGTTAGCAAGTAAAGGGCTTATTAAGAACGTGGTTGGTCATTGCTTGAGCAATGATGAAGTTGGTGGAGGTTACATGTTTTTGGGTGATGATTTCTTGCCATATTGGGGTATGACTTGGGTACCAATGGCCTATACCCTTACTACGGATTTATACCAAACTGAGATTTTTGGAATAAATTATGGAAACCGGCAACTCAGTTTTGATGGCCAAAGCAAAGTAGGAAAGGTGGTTTTTGATAGTGGCAGTTCTTATACATATTTCCCAAAAGAAGCATACTTGGATCTTCTTGCTTCTGTGAGTTTTTACATTTATCAATCTGGAACCATTTTGTACATTTTTCTTGAGTCTGTTCTTGAACACCACAAATTCATTACTTATACGTATTGGTGCAGCTTAATGAAGTTTCTGGGTTGA 876 0.3904 HVLPCRLYFTILRVGNPPRSYFLDVDTGSDLTWMQCDAPCTSCGKGAHALYKPTRSNVVSSMDSLCLDVQKNQKNGHHESLQQCDYEIEYADRSFSLGVLIRDDLHLVSKNGSKIKLNFVFGCGYDQEGLLLNTLAKTDGIMGLSRAKVSLPNQLASKGLIKNVVGHCLSNDEVGGGYMFLGDDFLPYWGMTWVPMAYTLTTDLYQTEIFGINYGNRQLSFDGQSKVGKVVFDSGSSYTYFPKEAYLDLLASVSFYIYQSGTILYIFLESVLEHHKFITYTYWCSLMKFLG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01493 291 ProSiteProfiles Peptidase family A1 domain profile. 8 291 IPR033121 -
Vimu8g01493 291 PANTHER ASPARTYL PROTEASES 8 254 IPR001461 GO:0004190|GO:0006508
Vimu8g01493 291 Gene3D Acid Proteases 190 283 IPR021109 -
Vimu8g01493 291 FunFam Aspartyl protease family protein 1 183 - -
Vimu8g01493 291 SUPERFAMILY Acid proteases 6 254 IPR021109 -
Vimu8g01493 291 Gene3D Acid Proteases 4 183 IPR021109 -
Vimu8g01493 291 Pfam Xylanase inhibitor N-terminal 8 183 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01493 Vimu-Chr8 20957347 20958759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01493 1 250 Miscellaneous Gene Families AT1G44130 39.921 8.72e-60 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01493 - - gmx:100783933 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01493 8 20957347 20958759 Vimu8g01493 8 20957347 20958759 ECH