Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01473 CTTCTCAATATCTCTTCATCCCTTCACCAAGCCAACCAAATCATCTCTTTCAAACCCCAAAACCCTCTGCAACAAGCTTTAACTCAACAGCAAAACCCCACTTCACCTTCTTCCTCTTTCTTCTCCGTTCAACTCCACACAAGAGAGACCCTCGTCAATGAGCAACACCCAGATTACAAAACTCTAGTTTTGGCCCGACTCGCCCGCGACTCGGCGCGAGTCAACTCGCTCCTGACCAAACTGCAGCTCAAACTCTATGGCGTCAAAAGATCGGACCTTTACCCGACCAAGACGGAGGTCGGACTCGAAGACCTCACCACGCCTGTCTCCTCCGGCACCTCCCAGGGAAGCGGCGAGTACTTCTCACGCGTCGGCGTCGGCCAGCCCGCAAAGCCCTTCTACATGGTCCTCGACACTGGCTCCGACGTCAACTGGCTCCAATGCAAACCCTGCTCAGATTGTTACCAACAATCCGACCCGATTTTCGACCCTACATCATCCTCCTCGTACAACCCGTTAACCTGCGACGCGCAGCAGTGTCAGGACCTTGAAATGTCGGCTTGCAGAAACAGTAGATGCCTCTACCAGGTTTCCTACGGAGATGGGTCGTTCACCGTAGGCGAGTACGTCACTGAAACGGTGTCATTCGGCGGGTCCGGGTCAGTTAGTCGGGTCGCGATCGGGTGCGGGCACGATAACGAGGGGCTGTTCGTTGGAGCGGCGGGGCTTCTCGGCCTTGGTGGTGGGCCGCTGTCATTAACCTCGCAAATCAAAGCGGCGTCGTTTTCGTACTGTTTAGTGGATCGCGACTCTGGTAAATCGTCCACTCTTGAGTTCAACTCACCTCGACCCAGTGACTCGGTCACCGCGCCGCTGCTGAAGAACCGCCAAGCGAACACGTTCTACTACGTTGAACTCACCGGATTTAGCGTCGGCGGCGAGATGGTCTCCATCCCACCAGAAACTTTCGCCGTCGATCAGTCCGGTGTCGGTGGGGTGATCGTCGATTCCGGTACCGCCATAACTCGCCTGCGGACTCAGGCCTACAACGCCGTGCGCGACGCATTCAAGAGGATGACCCAGAACCTCCGTCCCGCGGAGGGCGTTGCGCTGTTCGACACGTGCTACGACCTGTCGTCCCTGCAATCCGTGCGCGTGCCGACGGTGTCGTTTCACTTCGCCGGCGACAAGACGTTGGCGCTTCCGGCGAAGAATTATCTGATTCCGGTAGACGGCGCCGGGACTTACTGTTTCGCGTTTGCGCCAACGGCGTCGACTCTGTCGATCATAGGGAACGTGCAGCAGCAGGGGACACGTGTCAGTTTCGATCTAGCGAACTCTGTAGTGGGATTCTCTCCCAACAAGTGCTAG 1371 0.5689 LLNISSSLHQANQIISFKPQNPLQQALTQQQNPTSPSSSFFSVQLHTRETLVNEQHPDYKTLVLARLARDSARVNSLLTKLQLKLYGVKRSDLYPTKTEVGLEDLTTPVSSGTSQGSGEYFSRVGVGQPAKPFYMVLDTGSDVNWLQCKPCSDCYQQSDPIFDPTSSSSYNPLTCDAQQCQDLEMSACRNSRCLYQVSYGDGSFTVGEYVTETVSFGGSGSVSRVAIGCGHDNEGLFVGAAGLLGLGGGPLSLTSQIKAASFSYCLVDRDSGKSSTLEFNSPRPSDSVTAPLLKNRQANTFYYVELTGFSVGGEMVSIPPETFAVDQSGVGGVIVDSGTAITRLRTQAYNAVRDAFKRMTQNLRPAEGVALFDTCYDLSSLQSVRVPTVSFHFAGDKTLALPAKNYLIPVDGAGTYCFAFAPTASTLSIIGNVQQQGTRVSFDLANSVVGFSPNKC 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01473 456 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 333 344 IPR001969 GO:0004190|GO:0006508
Vimu8g01473 456 Gene3D Acid Proteases 96 279 IPR021109 -
Vimu8g01473 456 CDD cnd41_like 119 456 IPR033873 -
Vimu8g01473 456 Gene3D Acid Proteases 280 456 IPR021109 -
Vimu8g01473 456 FunFam Aspartyl protease family protein 2 280 456 - -
Vimu8g01473 456 FunFam aspartyl protease family protein 2 97 279 - -
Vimu8g01473 456 Pfam Xylanase inhibitor C-terminal 302 452 IPR032799 -
Vimu8g01473 456 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 135 146 IPR001969 GO:0004190|GO:0006508
Vimu8g01473 456 Pfam Xylanase inhibitor N-terminal 120 279 IPR032861 -
Vimu8g01473 456 ProSiteProfiles Peptidase family A1 domain profile. 120 452 IPR033121 -
Vimu8g01473 456 SUPERFAMILY Acid proteases 114 456 IPR021109 -
Vimu8g01473 456 PANTHER ASPARTYL PROTEASES 36 450 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01473 Vimu-Chr8 20835713 20838472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01473 111 456 Miscellaneous Gene Families AT1G77480 26.546 6.38e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01473 K22683 - gmx:100784849 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01473 8 20835713 20838472 Vimu8g01473 8 20835713 20838472 ECH