Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00688 ATGCTTCGCAGCAGACTCTATCAGCTTTGTGTGGCCACCTTTTTATGCATCTTTTTATGTCATGGAAGTTTGCATGCAGATATATGTGTGGAGACAGACAAGCAAGCCCTTCTCAAGTTAAAGGAAGGTTTTGTTCATAGAATGGAACTTCTATCTTCTTGGAACGGTGATGATTGTTGCATATGGAAAGGAGTTTCATGCAATAATTTAACAGGTCATGTAACCTCACTTCATCTCAGATTTTCAAATTCTACACGTGTTGAAGATTTAAACTATCTTTTAGACACGATGCCTGAGATGAAATTTTTCAGTGCCCCTACAAACTTGGGAGGTAACATAGATTATTCAATATGTGAGCTGAAGCATCTCACTTTCTTAGATCTCAGTCATAATGACTTACAGGGAGAGATCCCAAAATGTATTGGTTCACTTGTTCAATTGACACAGTTAAATCTTGCATGGAATTTTCTTAAATCTGTTCCTTATTCTCTGTCAAATCTTTCCAATTTGCAATATCTTAACCTTGGGAGAAATTATTTTGTTGCAAAAGACCTTGATTGGCTTTCTCACCTTTCTACTTTGAGATACCTTGATCTCTCAAGAAACAATCTTGATGCGGTTACTGATTGGCCATCATCAATAAGTAAACTCCCTTTTCTATCTGAGCTCTATTTAAATGATTGTGCACTTCCTCAAGTCAAACCTAAATCAATCTCCCACATCAATTCTTCCACTTTCCTCCAAACTCTCAGTCTATCAGGAAATCACTTTGACTCTTCAATTATGTCATGGGTGTTGAATGTTAGCAAAGTCCTAACAGTTCTTGATCTCTCACATAATGAACTTGATAATGGCATCATAAAGACCTTCAACACTTTGTGTCAACTTAAGAAGTTGTATCTGGGTTTCAATAAATTGTCCGATAAACTCAGTGATTATTTACCGCAATTTTGTTCTACAAAGGATTTAAAGGTGTTGAATCTCGACCACAACCCATTTAATAATGGGTGGCTTCCTGATTTTTCATTGTTTTCATCCTTGGAAAGACTTTCACTTCAGAATACTAGTACTGTTGGGCCTTTATTATTTGGTCACTTGCCTCGTCTTAAAGCTTTGGATCTCAGTTTAAACAGTTTGAATGGATCATTGCCTGTATTCGAAGTGACGAAATTTGCCTCACTGCATTATTTGGATCTTTCACACAACAAATTGAGTGGGAGACTTCCATATAGTATTGGACAACTTTCTAATCTCTGGTTTTTGTCCATTTCTTCAAATGAGTTGAATGGAGACATTAGTGAAGAGCATGTATTAAACCTGACTGGATTGAAGATATTTGATGTGAGTAAAAATTCTCTTTCGTTTAACTTGAATACTGATTGGGTTCCACCTTTCCAGTTGGTGGCATTATATGCATCATCTTGCATTTTGGGGCATCAATTTCCATTGTGGCTTAAACATCAAAAGAAACTTCAGGTGCTGCAAATCTCTAATACCTCCATTATGGATTCATTTCCTAAATGGTTTGGGAACATATCATCAAGTTTGTTATACATAAATGTTTCCCATAATAAGCTTAGTGGAGTCTTACCAAAATCATTATCTGATATAAAAACAGGACTTATGAGTACATGGGATTTTAGTTTCAACAATTTGTCTGGCCCATTGCCTCCTTTTCCTCCAAAAGTAAGTAAACTCTTTCTCTCAAATAATAAGTTCTCAGGGTTCGTATCTTCCTTTTGTGAAACATCCCCAATGTCTGTAACTTACCTTGTCCTGTCTAGTAACACACTCACAGGTCCCCTTCCAAATTGTTGGCAGAAATTTCAAAATTTGGAAATTCTGAGTTTGGCACATAATAATTTATCAGGGAGAGTGCCAGAGTCATTTGGCAATTTACGAAGTATTTCGTCGATATATCTAACTAACAATAGCTTCTCTGGTGAGATACCATCTCTGGCTCTTTGTAAAGGAAGCGTAAAAGTCATTGCTTTTGGGAATAATAATTTTGAAGGAACATTACAAACATGGTTAGACTTTGATAGTCTCATTGTCTTGAGTCTACGTGGTAACAAGATCCGAGGAAGCATTCCGAGAAGCCTATGTAATATGTTATCTCTTACAATTTTGGATCTCTCATCAAACAACATTACAGGGGAAATACCAGAATGCATCGGTCACATAAGTGGGATGTCAGATATGGAAATTCGAGTAGATACCATTTATGGAACGTCGGCACCTTTAGTATTTCATGATAGTGGAATTGGGTATTTTTCTGAGGGATTATTCTTTATTATCATTGATATTTCTAATAACAACTTAAGAGGAGAGATACCGGAAAGTATAACATCACTAGTGGCTTTAAGAGTCTTAAATCTTTCCATGAATAATCTTAATGGATTCATTCCTGACAATATTGGTCGTTTGGAGATCTTGGAATTTATTGACTTTTCAAGAAACCATCTTCATGGTAGGATTCCAACAAGCTTTTCAAATATTGTTGTTCTCGCTGTGATGGACTTGTCTTTCAACAACTTATCAGGAATGATTCCGATAGGCACCCAACTACAAAGCTTTGATGAGTCTTCTTATGTTGGGAACATTGGGCTTTGTGGCCCACCACTCGAAAACCAATGCCCAGATGTGATTCCACAGAGAGGAAGAAGATGTTTGTGGAACTTTAATACTAAAAAGTTCATGGAGATATGCTTATTTTCAGTGCTTCATCAATATAACCGATTGGATGTATGTCACAATCGTTGTCTTTACTGTCAGAATGAAAAGAAGATTCCGAATTCAAGACCTCAAGATATGTGTGCGGAGACAGAGAAGCAAGCTCTTCTCAAGTTAAAGGATGGCTTTGTTCATGGAATGGAACTTCTATCTTCCTGGAACGGTGATGATTGTTGCATATGGAAAGGAGTTTCATGCAATAATTTAACAGGTCATGTAACCTCTCTTCATCTCAGATTTTCAAATTTTACTCGGGTTGAAGATTTAAACTATCTTTTAGACACAATGCCAGAGATGAATTTTTTCAGTGCCCCTACAGAATTGGGAGGTAAGATAGATTCTTCAATATGTGAGCTGCAACATCTCACTTTCTTAGATCTCAGTCATAATTACTTACAGGGAGACATCCCAAAATGTATTGCTTCACTTCATCAATTGACACATTTAAATCTTTCATGGAATGGTCTTAATTCCGTTTCTTATGCTCTGTCAAATCTTTCCAATTTGCAATATCTTGATCTTGGGAAAAATAATATTGTTGCAAGAGACCTTGATTGGCTTTCTCACCTTTCAACTTTGAGATACCTTGATCTCTCAAGAAACAATCTTTGTGCGGTTACTGATTGGCCATTATCAATAAGTAAAATCCCTTTTTTATCTGAACTCTATTTAAATGATTGTGGACTTCCTCAAGTTAAACCAAAATCAATCTCCCACATCAATTTTTCCACTTACCTCCAAATCCTCAGTCTATCAGGAAATCACTTTGACTCTTCAATCATGTCATGGGTGTTGAATGTTAGCAAAGTCCTCACAGTTCTTGATCTCTCACATAATGAACTTGATATTGGCATCATAAAGTCCTTTAACATTTTGTGTCAACTTAAGAAATTGTACCTCGGTTCCAATAAATTGTCTGAACAACTCAGCGATTACTTACCAGAATTTTGTTCTGCTAAAGATTTAGAGGTGTTGAGTCTTGACCATAATCCATTTGGTAAAGGGTTGCTTCCTGATTTTTCATTATTTTCATCCTTGGAAAGACTTTCACTTCAGAATACCATGATTGTTGGGCCTTTATTATTTGGTCGCTTGCCTCGTCTTAAAGCTTTGGATCTCAGTTTAAACAATTTGAATGGATCATTGCCTGTATTCGAAGTGACAAAATTTGCCTCACTGCATTTTCTGGATCTTTCACACAACAAATTGAGTGGGAGACTTCCATATAGTATTGGACAACTTTCTAATCTCTGGTTTTTGTCCATTTCTTCAAATGAGTTGAATGGAGACATTAGTGAAGAGCATGTATTAAACCTGACTGGATTGAAGATATTTGATGTGAGTAAAAATTCTCTTTCGTTTAACTTGAATACTGATTGGGTTCCACCTTTCCAGTTGGTGGCATTATATGCATCATCTTGCATTTTGGGGCATCAATTTCCATTGTGGCTTAAACATCAAAAGAAACTTCAGGTGTTGCAAATCTCTAATACATCCATTATGGGTTCGTTTCCTGAATGGTTAGGGGACATATCATCAACTTTGTTATACATAAATGTTTCCCATAATAAGCTTAGTGGAGTCTTACCAAAATCACTACCAGATATAAAAACAGGACTTATGAGTACATGGGATTTTAGTTTCAACAATTTGTCTGGCCCATTGCTTACTTTTCCTCCGAAAGTATATAAACTCTTTCTCTCAGATAATAAGTTCTCAGGGTTTGTATCTTCCTTTTGTGAAACTTCCCCAGTATCTGTGACTTATCTTGACCTGTCCAGTAACGCACTCACAGGCCCCCTTCCAAATTGTTGGCAGAAATTTCAAAGTTTGCTAATTCTGAATTTAGCAAATAACAATTTATCAGGGAGAGTGCCTGAGTCATTTGACAATTTACAAAGTATTCTGTCGATGCATCTAAATAACAATAACTTCTCTGGTGAGATTCCACCACTGACTCTTTGCAAAGGACGCTTAAGATTTATTGATTTTGGGGATAATAATCTTGAAGGAACATTACAAACATTGTTAGACTTTGATCATTTGATTGTATTGCGTCTACGAGGGGAAATACCACAATGCATTGGTCGCATAAGTGCAATGTCAGATATGGAATTTGAAAGGGAAACCGTGTTCTATGGAACATCTGCACCTTTAGTATTTCATGACAGTGGAATTGGGCTTTTTTTTGATGAAATATTATTGACATTGAGAGGAAGTGACCTCGAATTCACGAGTCTTTTAGGATTTTTGAGAGCCATTGATATTTCTAATAACAACTTAAGAGGAGAGATACCGAAAGGTATAACATCACTAGTGGCTTTAACAAGCTTAAATCTTTCAAGAAATAATCTTACAGGATTAATTCCTGATAACATTGGTCGTTTGAAGAGCTTGGAATCACTTGACTTGTCAAGAAACTATCTTCATGGTAGAATGCCAACAAGCTTTTTAAATTTGAATTTTCTCAGTTACTTGAACTTGTCTTTCAACAACTTATCAGGAATGATTCCAATAGGCGGCCAACTACTTACCTTTGGTGAGTCTTCTTATGTTGGGAACATTGGGCTTTGTAGCCCACCACTCGAAAACCAATGCCCATATGTGATTCCACAGAGAGGAAGAAGAGTTCAGAAAACAGAGGATGAATTCTTAAGCTTTGAGTTTTATCTGAGCATGGGTTCAACTTCAATTGGTGGTGGACCTGGATTGGCTTATGGTCTTGAAAGTGCTCAATCATTGTCCCAAGCTTCAAAGTCTTGTTATTGGCATTCAGAAGGTTTAATGATTAAGATTTTCAATGTTCGTTATTATCAGACCTTAAATTTACCAGGCTATGAAGAAGATGTTTGGCCATATCCACAAATTGTTCCTGCATGCATTTCATCACAGCTTAAAACCTGCCGTCTTAATTATTACAGTGCTTCTAAAGATGAGTTTCACTTTGCAAGATATATATTGGAGAATGCAAAATATCTACAGACCATGAAAATACGCTTTGATGATGGTTGGGATTTAATGGCAACGAGGAAAATACGCACTGTTTGGCAAGAAAATGATATGAAAAGAGAATTATCTTCCTGCATGATCAGATACTTTTACCCTTTTATTTGA 5847 0.3636 MLRSRLYQLCVATFLCIFLCHGSLHADICVETDKQALLKLKEGFVHRMELLSSWNGDDCCIWKGVSCNNLTGHVTSLHLRFSNSTRVEDLNYLLDTMPEMKFFSAPTNLGGNIDYSICELKHLTFLDLSHNDLQGEIPKCIGSLVQLTQLNLAWNFLKSVPYSLSNLSNLQYLNLGRNYFVAKDLDWLSHLSTLRYLDLSRNNLDAVTDWPSSISKLPFLSELYLNDCALPQVKPKSISHINSSTFLQTLSLSGNHFDSSIMSWVLNVSKVLTVLDLSHNELDNGIIKTFNTLCQLKKLYLGFNKLSDKLSDYLPQFCSTKDLKVLNLDHNPFNNGWLPDFSLFSSLERLSLQNTSTVGPLLFGHLPRLKALDLSLNSLNGSLPVFEVTKFASLHYLDLSHNKLSGRLPYSIGQLSNLWFLSISSNELNGDISEEHVLNLTGLKIFDVSKNSLSFNLNTDWVPPFQLVALYASSCILGHQFPLWLKHQKKLQVLQISNTSIMDSFPKWFGNISSSLLYINVSHNKLSGVLPKSLSDIKTGLMSTWDFSFNNLSGPLPPFPPKVSKLFLSNNKFSGFVSSFCETSPMSVTYLVLSSNTLTGPLPNCWQKFQNLEILSLAHNNLSGRVPESFGNLRSISSIYLTNNSFSGEIPSLALCKGSVKVIAFGNNNFEGTLQTWLDFDSLIVLSLRGNKIRGSIPRSLCNMLSLTILDLSSNNITGEIPECIGHISGMSDMEIRVDTIYGTSAPLVFHDSGIGYFSEGLFFIIIDISNNNLRGEIPESITSLVALRVLNLSMNNLNGFIPDNIGRLEILEFIDFSRNHLHGRIPTSFSNIVVLAVMDLSFNNLSGMIPIGTQLQSFDESSYVGNIGLCGPPLENQCPDVIPQRGRRCLWNFNTKKFMEICLFSVLHQYNRLDVCHNRCLYCQNEKKIPNSRPQDMCAETEKQALLKLKDGFVHGMELLSSWNGDDCCIWKGVSCNNLTGHVTSLHLRFSNFTRVEDLNYLLDTMPEMNFFSAPTELGGKIDSSICELQHLTFLDLSHNYLQGDIPKCIASLHQLTHLNLSWNGLNSVSYALSNLSNLQYLDLGKNNIVARDLDWLSHLSTLRYLDLSRNNLCAVTDWPLSISKIPFLSELYLNDCGLPQVKPKSISHINFSTYLQILSLSGNHFDSSIMSWVLNVSKVLTVLDLSHNELDIGIIKSFNILCQLKKLYLGSNKLSEQLSDYLPEFCSAKDLEVLSLDHNPFGKGLLPDFSLFSSLERLSLQNTMIVGPLLFGRLPRLKALDLSLNNLNGSLPVFEVTKFASLHFLDLSHNKLSGRLPYSIGQLSNLWFLSISSNELNGDISEEHVLNLTGLKIFDVSKNSLSFNLNTDWVPPFQLVALYASSCILGHQFPLWLKHQKKLQVLQISNTSIMGSFPEWLGDISSTLLYINVSHNKLSGVLPKSLPDIKTGLMSTWDFSFNNLSGPLLTFPPKVYKLFLSDNKFSGFVSSFCETSPVSVTYLDLSSNALTGPLPNCWQKFQSLLILNLANNNLSGRVPESFDNLQSILSMHLNNNNFSGEIPPLTLCKGRLRFIDFGDNNLEGTLQTLLDFDHLIVLRLRGEIPQCIGRISAMSDMEFERETVFYGTSAPLVFHDSGIGLFFDEILLTLRGSDLEFTSLLGFLRAIDISNNNLRGEIPKGITSLVALTSLNLSRNNLTGLIPDNIGRLKSLESLDLSRNYLHGRMPTSFLNLNFLSYLNLSFNNLSGMIPIGGQLLTFGESSYVGNIGLCSPPLENQCPYVIPQRGRRVQKTEDEFLSFEFYLSMGSTSIGGGPGLAYGLESAQSLSQASKSCYWHSEGLMIKIFNVRYYQTLNLPGYEEDVWPYPQIVPACISSQLKTCRLNYYSASKDEFHFARYILENAKYLQTMKIRFDDGWDLMATRKIRTVWQENDMKRELSSCMIRYFYPFI 1948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00688 1948 SUPERFAMILY L domain-like 315 575 - -
Vimu8g00688 1948 Pfam FBD 1867 1909 IPR006566 -
Vimu8g00688 1948 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Vimu8g00688 1948 Pfam Leucine rich repeat N-terminal domain 941 978 IPR013210 -
Vimu8g00688 1948 FunFam Tyrosine-sulfated glycopeptide receptor 1 657 883 - -
Vimu8g00688 1948 SMART LRR_sd22_2 1350 1369 - -
Vimu8g00688 1948 SMART LRR_sd22_2 440 459 - -
Vimu8g00688 1948 SMART LRR_sd22_2 293 316 - -
Vimu8g00688 1948 SMART LRR_sd22_2 1030 1056 - -
Vimu8g00688 1948 SMART LRR_sd22_2 609 635 - -
Vimu8g00688 1948 SMART LRR_sd22_2 191 219 - -
Vimu8g00688 1948 SMART LRR_sd22_2 144 169 - -
Vimu8g00688 1948 SMART LRR_sd22_2 704 730 - -
Vimu8g00688 1948 SMART LRR_sd22_2 391 417 - -
Vimu8g00688 1948 SMART LRR_sd22_2 1707 1733 - -
Vimu8g00688 1948 SMART LRR_sd22_2 1077 1100 - -
Vimu8g00688 1948 SMART LRR_sd22_2 1203 1226 - -
Vimu8g00688 1948 SUPERFAMILY L domain-like 545 876 - -
Vimu8g00688 1948 ProSiteProfiles Leucine-rich repeat profile. 1079 1102 IPR001611 GO:0005515
Vimu8g00688 1948 Gene3D Ribonuclease Inhibitor 939 1117 IPR032675 -
Vimu8g00688 1948 Gene3D Ribonuclease Inhibitor 1118 1220 IPR032675 -
Vimu8g00688 1948 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1654 1777 - -
Vimu8g00688 1948 FunFam Tyrosine-sulfated glycopeptide receptor 1 363 656 - -
Vimu8g00688 1948 Gene3D Ribonuclease Inhibitor 1381 1780 IPR032675 -
Vimu8g00688 1948 PANTHER LRR RECEPTOR-LIKE KINASE 322 882 - -
Vimu8g00688 1948 SMART LRR_bac_2 1276 1296 - -
Vimu8g00688 1948 SMART LRR_bac_2 513 533 - -
Vimu8g00688 1948 SMART LRR_bac_2 1519 1539 - -
Vimu8g00688 1948 SMART LRR_bac_2 1683 1703 - -
Vimu8g00688 1948 SMART LRR_bac_2 1423 1447 - -
Vimu8g00688 1948 SMART LRR_bac_2 144 163 - -
Vimu8g00688 1948 SMART LRR_bac_2 366 386 - -
Vimu8g00688 1948 Gene3D Ribonuclease Inhibitor 1221 1380 IPR032675 -
Vimu8g00688 1948 SUPERFAMILY L domain-like 963 1291 - -
Vimu8g00688 1948 PRINTS Leucine-rich repeat signature 1686 1699 - -
Vimu8g00688 1948 PRINTS Leucine-rich repeat signature 1707 1720 - -
Vimu8g00688 1948 Pfam Leucine Rich repeat 706 720 IPR001611 GO:0005515
Vimu8g00688 1948 Pfam Leucine Rich repeat 121 136 IPR001611 GO:0005515
Vimu8g00688 1948 Gene3D Ribonuclease Inhibitor 238 559 IPR032675 -
Vimu8g00688 1948 Pfam Leucine rich repeat 1686 1744 IPR001611 GO:0005515
Vimu8g00688 1948 Pfam Leucine rich repeat 1073 1114 IPR001611 GO:0005515
Vimu8g00688 1948 Pfam Leucine rich repeat 1030 1067 IPR001611 GO:0005515
Vimu8g00688 1948 Pfam Leucine rich repeat 588 645 IPR001611 GO:0005515
Vimu8g00688 1948 Pfam Leucine rich repeat 163 204 IPR001611 GO:0005515
Vimu8g00688 1948 SUPERFAMILY L domain-like 28 335 - -
Vimu8g00688 1948 SUPERFAMILY L domain-like 1227 1464 - -
Vimu8g00688 1948 Gene3D Ribonuclease Inhibitor 560 883 IPR032675 -
Vimu8g00688 1948 SMART LRR_typ_2 120 143 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1101 1127 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 293 317 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1054 1076 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 217 240 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1077 1100 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 191 216 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 144 167 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 366 388 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1731 1754 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 785 809 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1683 1703 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1203 1227 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1030 1053 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1276 1298 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 704 728 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 391 415 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 609 632 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1707 1730 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1301 1325 IPR003591 -
Vimu8g00688 1948 SMART LRR_typ_2 1519 1542 IPR003591 -
Vimu8g00688 1948 Gene3D Ribonuclease Inhibitor 28 237 IPR032675 -
Vimu8g00688 1948 SUPERFAMILY L domain-like 1456 1773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00688 Vimu-Chr8 13627993 13641932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00688 13 882 Receptor kinase-like Gene Family AT5G27060 30.826 4.19e-74 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00688 - - vun:114181765 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00688 8 13627993 13641932 Vimu8g00688 8 13627993 13641932 ECH