Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00653 ATGAAGCAGTTTCTGCATCTCAGAAATAATCATGTCCTTGGTGTGATCTCTTTAATTCTGATATTGGGATCACTGGCAGAAAGTAGGGTTTACAGTGAATTGGGCAAGATTGAATATCCTGCCATCAATTGCAGAAAGCACAGTGCAAGTTTGAAAGATTTTGGAGGAGTTGGTGATGGGAAAACATCAAACACAAAGATTTTTCAATCTGCAATAAGCAAACTCAGCCAATATGCTTCTGATGGAGGTGCAACACTTATTGTGCCACCAGGGAAATGGCTAACAGGACCCTTTAATCTCACAAGCCATTTCACTCTTTTTCTTCAGAAGGATGCTGTTATTCTTGCTTCTCAGGAAGAGATGCTCCCGGTGGAAGGTCAAAATGGTACAATTGATGGACAAGGATCTTATTGGTGGGACAAGTTCCACAAGAAGCAGTTGACTCTCACTAGGCCCTACATGATTGAGATCATGTACTCTGATCAAATCCAAATATCAGATCTCACTTTGGTCAATTCCCCAACTTGGTTTGTCCATCCAATTTACAGCAGTAACATAATCGTAAAAGGGCTTACCATTCTTGCCCCAGTGGATTCTCCTAACACAGATGGAATAAACCCAGATTCTTGCACAAACACTAGGATTGAAGACTGCTACATTGTTTCTGGTGATGATTGCATTTCAGCAAAAAGTGGGTGGGATGAGTATGGAATTAAATTTGGAAAGCCAACCCAACACTTAGTGATTAGAAGAGTGACTTGTATATCCCCAGACAGTGCAATGGTTGCACTAGGCAGTGAAATGTCTGGTGGAATTGATGATGTTAGAGTTGAAGATCTCACTGCCATCAACACTGAATCAGCTGTTAGAATCAAAACAGCAGTTGGTAGAGGTGGTTTTGTGAAGAACATATTTGTCAGAGGATTGAATCTGAATACCATGAAATATGTATTTTGGATGACTGGTTCTTATGGACAACACCCTGACCCTAACTATGACCCCGAAGCACTTCCTACTGTTACCGGAATAAATTTCAAAGATGTTGTTGCCAAGAATGTTACAATTTCTGCAAAACTTGAAGGAATCTCCAAAGACCCTTTCACTGGAATCTGCATTTCCAATGTGACTATCCAAGTGAATGAACTGAAGAAGAAGAAGCTTCAATGGAATTGCACTGATGTTGCTGGAGTTACCAATAATGTCAGTCCTCCACCTTGTGCATTGCTGCCACAGAAAGATAAAACTGATTGTGCTTTTCCAAATGACAAACTACCCATTGAAGCTGTTCAATTCAAGACATGTTCCTTATAA 1311 0.4035 MKQFLHLRNNHVLGVISLILILGSLAESRVYSELGKIEYPAINCRKHSASLKDFGGVGDGKTSNTKIFQSAISKLSQYASDGGATLIVPPGKWLTGPFNLTSHFTLFLQKDAVILASQEEMLPVEGQNGTIDGQGSYWWDKFHKKQLTLTRPYMIEIMYSDQIQISDLTLVNSPTWFVHPIYSSNIIVKGLTILAPVDSPNTDGINPDSCTNTRIEDCYIVSGDDCISAKSGWDEYGIKFGKPTQHLVIRRVTCISPDSAMVALGSEMSGGIDDVRVEDLTAINTESAVRIKTAVGRGGFVKNIFVRGLNLNTMKYVFWMTGSYGQHPDPNYDPEALPTVTGINFKDVVAKNVTISAKLEGISKDPFTGICISNVTIQVNELKKKKLQWNCTDVAGVTNNVSPPPCALLPQKDKTDCAFPNDKLPIEAVQFKTCSL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00653 436 Gene3D - 29 401 IPR012334 -
Vimu8g00653 436 PANTHER PECTIN LYASE-RELATED 124 427 - -
Vimu8g00653 436 SMART pbh1 183 209 IPR006626 -
Vimu8g00653 436 SMART pbh1 340 374 IPR006626 -
Vimu8g00653 436 SMART pbh1 210 231 IPR006626 -
Vimu8g00653 436 SMART pbh1 272 293 IPR006626 -
Vimu8g00653 436 SUPERFAMILY Pectin lyase-like 42 421 IPR011050 -
Vimu8g00653 436 Pfam Glycosyl hydrolases family 28 111 395 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00653 Vimu-Chr8 13211086 13213682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00653 15 436 Glycoside Hydrolase AT3G48950 62.121 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00653 - - gmx:100779166 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00653 8 13211086 13213682 Vimu8g00653 8 13211086 13213682 ECH