Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00652 ATGTGGAGGGTGACAGACTCCACGAGAGCAGTGGGTGGTGACAGACTATGCGCGCTTATGGTCCTTGGTGTGATCTCTTTAATTCTGATATTGGGATCACTGGCAGAAAGTAGGGTTTACAGTGAATTGGGCAAGATTGAATATCCTGCCATCAATTGCAGAAAGCACAGTGCAAGTTTGAAAGATTTTGGAGGAGTTGGTGATGGGAAAACATCAAACACAAAGATTTTTCAATCTGCAATAAGCAAACTCAGCCAATATGCTTCTGATGGAGGTGCAACACTTATTGTGCCACCAGGGAAATGGCTAACAGGACCCTTTAATCTCACAAGCCATTTCACCCTTTTTCTTCAGAAGGATGCTATTATTCTTGCTTCTCAGGAAGAGATGATCCCGATGGAAGGTCAAAATGGTACAATTGATGGACAAGGATCTTATTGGTGGAACAAGTTCCACAAGAAGCAGTTGAGTCTCACTAGGCCCTTCATGATTGAAATCATGTACTCTGATCAAATCCAAATATCAGATCTCACTTTGGTCAATTCCCCAAATTGGTTTGTCCATCCAGTTTACAGCAGTAACATCATCGTAAAAGGGCTTACCATTCTTGCCCCAGTGGATTCTCCTAACACAGATGGAATAAACCCAGATTCTTGCACAAACACTAGGATTGAAGACTGCTACATTGTTTCTGGTGATGATTGCATTGCAGCCAAAAGTGGGTGGGATGAATATGGAATTAAATTTGGAAAGCCAACCCAACACTTAGTGATTAGAAGAGTGACTTGTATATCCCCAGACAGTGCCATGGTTGCACTAGGCAGTGAAATGTCTGGTGGAATTGATGATGTTAGAGTTGAAGATCTCACTGCCATCAACACTGAATCAGCTGTTAGAATCAAAACAGCAGTTGGTAGAGGTGGTTTTGTGAAGAACATATTTGTCAGAGGATTGAATCTGAATACCATGAAATATGTATTTTGGACGACTGGTTCTTATGGAGCACACCCTGACCCTAACTATGACCCCAAAGCACTTCCTATTGTTACCGGAATAAATTTCAAAGATGTTGTTGCCAAGAATGTTACAATTTCTGCACAACTTGAAGGAATCTCCAAAGACCCTTTCACTGGAATCTGCATTTCCAATGTGACTATCGAAGTCAATGAACTGAAGAAGAAGAAGCTTCAATGGAATTGCACTGATGTTGCTGGAGCTACCAATAATGTCACTCCTCCACCTTGTGCATTGCTGCCCCAGAAAGATAAAACTGATTGTGCTTTTCCAGATGACAAACTACCCATTGAAGCTGTTCAATTCAAGACATGTCTGCATCAAAGGATCTTAGATCTGCACACAGATCTACACCAAAGAGTCTCAGATCTGCCTCTCGTCGTCGCTCCTGATGTGTTTCAGCCTCTCAAGCACTTCGAATGGGATCACCTATTGTTGGAAGAAGAAGCTGTCGCGGACGGAGCCGTGAATGGTGAAAGAAGAAGCTGCTACGGATGGAGCCGTGAATGGTGGAAGAAGAAGCTGCAAACGCTGCAACGACAACGGCAATGTGAGGTCCTCGCGGCGTCGTTGAAGACGGTAGGTCTTGTTGTTGGTAGGTGGCGGAAAGAGGAAGGAAAAGGAATATCGAGAAAGAAGAAGAAAGAAGGGAAGGAGGTTTGA 1677 0.4341 MWRVTDSTRAVGGDRLCALMVLGVISLILILGSLAESRVYSELGKIEYPAINCRKHSASLKDFGGVGDGKTSNTKIFQSAISKLSQYASDGGATLIVPPGKWLTGPFNLTSHFTLFLQKDAIILASQEEMIPMEGQNGTIDGQGSYWWNKFHKKQLSLTRPFMIEIMYSDQIQISDLTLVNSPNWFVHPVYSSNIIVKGLTILAPVDSPNTDGINPDSCTNTRIEDCYIVSGDDCIAAKSGWDEYGIKFGKPTQHLVIRRVTCISPDSAMVALGSEMSGGIDDVRVEDLTAINTESAVRIKTAVGRGGFVKNIFVRGLNLNTMKYVFWTTGSYGAHPDPNYDPKALPIVTGINFKDVVAKNVTISAQLEGISKDPFTGICISNVTIEVNELKKKKLQWNCTDVAGATNNVTPPPCALLPQKDKTDCAFPDDKLPIEAVQFKTCLHQRILDLHTDLHQRVSDLPLVVAPDVFQPLKHFEWDHLLLEEEAVADGAVNGERRSCYGWSREWWKKKLQTLQRQRQCEVLAASLKTVGLVVGRWRKEEGKGISRKKKKEGKEV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00652 558 SMART pbh1 219 240 IPR006626 -
Vimu8g00652 558 SMART pbh1 192 218 IPR006626 -
Vimu8g00652 558 SMART pbh1 281 302 IPR006626 -
Vimu8g00652 558 SMART pbh1 349 383 IPR006626 -
Vimu8g00652 558 SUPERFAMILY Pectin lyase-like 51 442 IPR011050 -
Vimu8g00652 558 Gene3D - 38 410 IPR012334 -
Vimu8g00652 558 PANTHER PECTIN LYASE-RELATED 134 436 - -
Vimu8g00652 558 Pfam Glycosyl hydrolases family 28 123 404 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00652 Vimu-Chr8 13195231 13200440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00652 24 444 Glycoside Hydrolase AT3G48950 61.605 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00652 - - gmx:100779166 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00652 8 13195231 13200440 Vimu8g00652 8 13195231 13200440 ECH