Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00650 ATGTTCTCTTCCAATATAACGTTATACAGATATTCAAATACAAACACTTGGAAAGCAAAAATGCAGTGTCTTATTGCATTAGCGACAGGAACACTGACAAAACTTGGAGAATCCTTAGTTGCACCAATTGGAAATCAATTTGGATATCTAGTTCACTATAAGAAAAATATAAAAGATCTTAAAAGAGAAATCAAAACATTGAAAGGTAGAAAGCAAGGAGTGCAAGGTGTGGTTGATGAAGATAGAAGAAATGGACGTCAAATTGTATCAATTGTACAAGATTGGCTCTACAAAGTGGAAAGAATGATAGATGAAATAGAAAAATTTAATGATTTTCAAGTAGAAAACAATAAATGTCTTGATATATGGTCTCCAAATTTGATGTCAAGGTATTCATTAAGTAAGAAAGCAAAAATATTGATAATGAGTGTTACAAAATTAAATGAAGAGAAATTTGACATCATATCATACTCTCTACCAACACCAAAAATTGGATCCACCTTCTCAAATGTTATCAAAAGTTTTCCAAGCAGAAAATCAACTATTACAGAGGTTTTGGAGACATTGAAAGATGAAGATTTTAAAATCCTAAGTATATGTGGAATGGGTGGTGTGGGAAAGACAACACTTGTGAAAGAAGTAATTAAAATTTTAGAAGTATGCAAGCTATTTGATGAAGTTATAATGGTAGTGGTTTCCCAAAATCTTGACTATGTGAAAATTCAAGGTCAAATTGCTGATGCTTTAGGCTTGAGATTTGAAAAGGAGACAATTCAAGGAAGAGCATGTCAACTACATGAAAGACTGAAAGGTGTTAATAATATTTTAATAGTTCTTGATGATGTTTGGATAGACTTTGATTTTGAGTCTATTGGGATTCCTTCCGATGAACATCATAAGAATTGTAAAATTTTGTTTACATCAAGAAATGAAGATGTTTGTTATAAGATGGGAAGTCAAAAGAATTTCACAATTTCTATTTTGTCTCCAAATGAAGGTTGGGACCTTTTTCATGATATGATTGGTAGAAATCTTTCAACCAAGCTTGATATTCTTCACATAGCAAAAGAGGTTTCAAATGAATGTGGGGGGTTGCCAATTGCTATTGTTACAATGGCAAAAGCATTAGCAAATAAAGAAAAACATGTATGGGAAGATGCATTAGATCAATTAAAAAGATCTTCCATCACTTCCCTTTTAGAAATGCAAGCTTGTGTATATTCAAGCATCAAGCTAAGTTACAATTTTTTAGATACTGTAGAAGAAAAAAATGTTCTTTTTCTTTGTTGCTTATTTCCAGAAGATTTTGAGATTCCTATAGAGGTTCTACTCAGGCATGGAATGGGTTTGCAATTGTTTAATGAAATTAATGCACTGTGGAAAGTTAGAAATAGAGTGCACACCATTGTTGATAAACTTAAGAGACGCTTCATGTTGTTAGACGGTAATGTGGAAGAGTGTGTCAAAATGCATGATGTTATACGTGATGTTATCATATCAGTTGTATCTACAGAAGAATGTGATTTTATGGTACAATGTGATGGATATCAAATGGAACAATCTAAAGAAGAAACATGCTATCATAGCACTGCAATTTCACTTATCTCTGAAGAAGCAAAAGAACATCCTAAAGTGTTAAATTGTCCAAAGCTTAAGCTTTTGCAAATAGCATCAAAGAAGAAGGGTTTGATTCCAGATAATTTGTTCCAATCTATGAATAAGCTTATGGTGCTTAGTCTACAAAATGTGCACATTCATTCAATGTCTTTAGTAGTTCAAGCTTTAGGCAACATCCACACTCTACTACTAGAAGATTGTCAAGTAAGAGACATATCTATAATTGGTAAGCAACTCAAAAGGCTTGAGATTCTTAGTTTTTCTAACTCAAATATCAAAGAATTGCCAGAAGAAATTGGACAACTAAGTTCATTAAGGTTATTAGATTTGACTGAATGCAATGATCTCATTCAAATATCTACTAATGCCTTAGCAAGCTTATCTAGACTAGAAGAGCTCTATATTAGAGTACGAAGTCTTTCTTATAAGGAAATTAATCACATTCTTTTTGAGTTACAATCTTTATCTCATCATCTGAAGGTCATAGAGATTGTAATCTTGACAAATGAAGAGTTACCCATAGATTTGTTCTTCAAAAATATTGAGAGATTTTGGGTCTATTTGGGAGATTCTTCTACTCTTTTTCATGGCATTGTTCGAAAAGGATACTTGCATCCAAATATTTTGAAGTTGAATAATGCATATTACAAATATATCAAGAGGAGTGTGACAATTCGACAATTACTTGAAAAGGTTGAAATTCTCAATTTGGTTGCTATAAAAAACATGAAAAGTGTCATATTGGAGTTAAATGAAAGGGGTTTTCCATTTTTGAAACATCTAAGTATTGAGTTTTGCAACAACCTTGAATATGTTGTAGATGCAATTGATGGTTTTGTCTTTCCACAACTTCTATCATTTTCTTTAAGTAATTTGGATAATTTAAAAGAGATATTCAATGTGTCTAGTTACATGAGCCAAACGAGTGTCTTTGCAAAGGTTAAATCCATCTCTTCATCTCAATGCTTTGGAACCCTTACAAAGCTTAAAATAGAATATTGTAACAAGTTGAAGACGGTCTTCACATTGTTTCCAAGAACAATTAGTTTGGCTACACTTCAATGTTTGCATGTGGTTGAAAGCTATGGAATCGAATGCATCATTTCAAGTAATAGTAAGATTGACGATAAGTCAATGATTGAGTTTTCAAATTTAGTAGAATTGAAGTTGCAAGATCTACCAAACTTGATTGGGTATACAAATGTTATTCATGAGCGTTGTTCCTCAACAATCCAAATTCATGAATCCAGTGACCAATTAATTGTTGAAGATGGTCAATTGCTTAGTTCAAAATATGTTGATCAAATTATGCCAATTGCTACTCTTTTCGAATCTAACTGTATGCAACTGTTCCCGAAGTTGGAAAAACTCTTCTTACATGCATGTTCTTCGCTAGATATGGTGTTTGATCTGCAAAAATCACAATTTCATGGTGAATCAACGGCTTTCTTATTTCCTCAGTTGAAAGAAATAGAGATATCTTGGCTCAGTAAGTTAAGACACATTTGGGGCAATGTTCCAAGCTACATTCAAGGCTTTCAGAATGTGAAATCAATCAAAGTGAAGAAATGTGATTCCTTAGGGTTTCTTCTAACTCCCAACATTGCAAGGGCACTTACTCAGCTTCAAAAAATGGTCATACATAGCTGCCATTCCATGGAGAAAATTGTTGGAAAAGAAGAAAACCTAAATGCTGATGATGAAGAAAAGAATGTGAAAACCCTAGTGTTTGGTCAATTAGAATCTTTAACACTTATTGATCTTCCAAACCTTATGAGTATTTGTTCAGATTCCTATGAAGTAATGTGGCCATCTTTGAGATTTTTATGCATTGATGGGTGCCCTCAGCTTGTGACATCTTCCATGTTTACTCAAACTGTGGCAAGGCAAGAGAATTTCAATGGCTCATCAAGTTGTTCAACAACATATGATGTTGCAAATGGTACTTTTAAAGAGGATTCACCAAAGTTTCTTCAGTGTTGCCTTGGCTGCACCCCACATGTATTTTCCAACTTGAAGTTTAAGGCTTCATCAACAGAGAAAGTTCCTTCTGTCAGCAATATGTATTCCAAAGCAGAAACAGTATCCTCCATTCCAATTTTGGAACAAATGCAAGTAAAAGGATGGGATTCACTAGAAGTCTTGTTCCTTCTCAAACAAAACCAACTTTCTGATGACTCTAATACCAATTGTCTAGTGAAGTTGATACTTGCACAAACACCTAAAAGTTCTGTTGAAATCACTGCATTCAACAACCTCACTGTCTTAACTATAGATTCTTGTCACAAGTTGAGATATCTGTTCTCATATTCCATAGCAAAGCTCCTAGTGAAATTGCAAGAGATAAAAGTGTCAAACTGTAAGGTGATAAAGCAACTAGTCCAAGGAGAAGGAGAAGACAGTTTAACTCTATTTCTTCCTCAATCAAGTTCTGTCAAAGTATTTGAAAATTCTTCATCTACTGACCATGCTGCCTCTTCCCAAGAGGTATGTGCCTTAGAGTGGTCATCTTTGAAGAGAATCAGCATATCTCATTGTGGGGTGCTAGAAGTTGTTGTTGGTGAAATAGGGGAGAAAATAGATACCATAATTGCTTCATTTGCTCAACTGCAATCTCTTACATTGAGCCATCTACCAAATGCTGTAAGCTTTTGTCACAGACATTGTACATCAGAATCACAATCCTTTGAGAACATCCATGGTACTGGCTATCAAAACCATGAGGCAACAAGTAATGAAGAAATGAGAATCATGAGAGTTGATCCACTGATAAATGGCTTTATTTTTCCTAATCTAACATATCTGGCAATAACTAGCTGCAACAAAGTTAGAAATTTGTTCTCTCCTTCAACATCAACTAGCTTTGTGCGTTTGGTAGAGCTAGATATATCTGGTTGTAGGGAGATAGAGGAAATAGTGTCTGCAGAAGAAACACAAGGGAATGTGATTAGGATTGTGTTCCACAGCTTGCAACGTCTGAAACTTGAAAACCTACCAAAGCTCAAGGCCTTCTGTCAGGGTTCCTATGGCTTTGATTTTCCATCATTGCATCAAGTATTCATCAAAAATTGCCACATGATGAAGACATTCTCTCATGACCCTTTATACACTCCAAAGTTGGAAACAGTCACCATGGAAATTGGAAGTATAACCAAGAACATGTGGATGGGAGATTTGAATGCTACTGTACCACTTTGCAAAGGACTTTTGGCTTTTCAAACATCAGAGACACTTGGATGGATCAAGCAGGATACATGCATACAAAGATACTTCACCCATGAAAAACACTTGACAGTTGAAAGTTTTCAAAGGCTGCTCAAACTAGTTCCCTCCAACGTAATACACATATTTCAAAATCTAAAGGAACTCACTATAAAAAATTGTGGTTCACTGGTTGAGGTCTTTGAATCACATGGTGTGGATGCAAAGCAAATGCATGCCATGGTACATTACAAGCTAGAAGCATTGAATTTGTATTTTCTACCAAAACTGATCAACCTGTGGAAAAATTATGGTGGAGTTCTGGGATTCCAGAAGCTAAGAATACTAAATGTGCAGCACTGTAGCAACTTGTGTAATTTGTTCCCTCCATCAATAGCCAGAAGTCTAGTACAACTTAGGCATCTACGAGTTCATAGTTGCCACATGATGGAGGAAATAACTACTAAGGAAGATGAGGAATCAGAAGGAGCAAATAATGCTAAGATTGTATTTCCACTTTTGAACAAGCTGGAGCTTCGTTATGTTCCCAACCTCAAATGTTTCTCCTCGGGAAATTTCAATATTGATCTTCCCTCATGTGAAGAAATGATAATTGAAAAATGTCCCAAGATGACTACCTTCTGCTATGGATCAGTAACCACAGCAAAGCTTCCCCATATATATAAAGGTTCATATGAGTATGTTGAGATAATGGGAGACCTTAATATGACCATCTATCATGCTAATGAGAGTTTGAAGGTTGCACAACAAACATCAGAGACAATCACATGCATTGAGCATGGTCAAGAGCTGCAGCCTTACTTAAGAAGTGATACAGAATTGGTTGTTCAAGGAAGTGAAAAACTGTTGCATTGTATTCCATCCAACATGCTGCATAGGTTCCAGCATCTAAAACAACTCAAGGTGCATTATGATTGTGGTTCACTAGTCGAGATATTTGAATCAGAGGAAGTGGATGAAAATGAAGATGAAGGGGATACCACAACACCATACAATTTTGGTCTGCAGGAACTGCATCTGTATGATCTTCCTAAACTGATGCACATATGGAAATATCATGGTCGAATCTTGAGCTTTATGAACCTTAAAAAGCTAAAGATTCAGCATTGTCATAGTTTGAAAAATGTGCTTTCTCCTGAGATGGCCAGAAGCCTTTCACAACTCCAAGAGCTTTCACTACATGAATGTGAGCTGATGGAAGTGATCATCACTAGAGATGAGAAACTATCAGAAGAACCAAACAAGGTTAAGATTATATTCCAGGCATTGCAATGGCTAACCCTTTACCGGCTTCCAAACTTTAGATGTTTCTGTTCAAGCACTTACCATTTTGAGCTGCCATCCTGCCATGACATAACTATTACAGAATGTCCTAAGATGGAGGCTTGCCATGGAAATAGAGGCACCTCAGAACTTCCTTCTGTCTCCTTTAAGACAAATGGTCTCAGGAGAGAAATCTAA 6300 0.354 MFSSNITLYRYSNTNTWKAKMQCLIALATGTLTKLGESLVAPIGNQFGYLVHYKKNIKDLKREIKTLKGRKQGVQGVVDEDRRNGRQIVSIVQDWLYKVERMIDEIEKFNDFQVENNKCLDIWSPNLMSRYSLSKKAKILIMSVTKLNEEKFDIISYSLPTPKIGSTFSNVIKSFPSRKSTITEVLETLKDEDFKILSICGMGGVGKTTLVKEVIKILEVCKLFDEVIMVVVSQNLDYVKIQGQIADALGLRFEKETIQGRACQLHERLKGVNNILIVLDDVWIDFDFESIGIPSDEHHKNCKILFTSRNEDVCYKMGSQKNFTISILSPNEGWDLFHDMIGRNLSTKLDILHIAKEVSNECGGLPIAIVTMAKALANKEKHVWEDALDQLKRSSITSLLEMQACVYSSIKLSYNFLDTVEEKNVLFLCCLFPEDFEIPIEVLLRHGMGLQLFNEINALWKVRNRVHTIVDKLKRRFMLLDGNVEECVKMHDVIRDVIISVVSTEECDFMVQCDGYQMEQSKEETCYHSTAISLISEEAKEHPKVLNCPKLKLLQIASKKKGLIPDNLFQSMNKLMVLSLQNVHIHSMSLVVQALGNIHTLLLEDCQVRDISIIGKQLKRLEILSFSNSNIKELPEEIGQLSSLRLLDLTECNDLIQISTNALASLSRLEELYIRVRSLSYKEINHILFELQSLSHHLKVIEIVILTNEELPIDLFFKNIERFWVYLGDSSTLFHGIVRKGYLHPNILKLNNAYYKYIKRSVTIRQLLEKVEILNLVAIKNMKSVILELNERGFPFLKHLSIEFCNNLEYVVDAIDGFVFPQLLSFSLSNLDNLKEIFNVSSYMSQTSVFAKVKSISSSQCFGTLTKLKIEYCNKLKTVFTLFPRTISLATLQCLHVVESYGIECIISSNSKIDDKSMIEFSNLVELKLQDLPNLIGYTNVIHERCSSTIQIHESSDQLIVEDGQLLSSKYVDQIMPIATLFESNCMQLFPKLEKLFLHACSSLDMVFDLQKSQFHGESTAFLFPQLKEIEISWLSKLRHIWGNVPSYIQGFQNVKSIKVKKCDSLGFLLTPNIARALTQLQKMVIHSCHSMEKIVGKEENLNADDEEKNVKTLVFGQLESLTLIDLPNLMSICSDSYEVMWPSLRFLCIDGCPQLVTSSMFTQTVARQENFNGSSSCSTTYDVANGTFKEDSPKFLQCCLGCTPHVFSNLKFKASSTEKVPSVSNMYSKAETVSSIPILEQMQVKGWDSLEVLFLLKQNQLSDDSNTNCLVKLILAQTPKSSVEITAFNNLTVLTIDSCHKLRYLFSYSIAKLLVKLQEIKVSNCKVIKQLVQGEGEDSLTLFLPQSSSVKVFENSSSTDHAASSQEVCALEWSSLKRISISHCGVLEVVVGEIGEKIDTIIASFAQLQSLTLSHLPNAVSFCHRHCTSESQSFENIHGTGYQNHEATSNEEMRIMRVDPLINGFIFPNLTYLAITSCNKVRNLFSPSTSTSFVRLVELDISGCREIEEIVSAEETQGNVIRIVFHSLQRLKLENLPKLKAFCQGSYGFDFPSLHQVFIKNCHMMKTFSHDPLYTPKLETVTMEIGSITKNMWMGDLNATVPLCKGLLAFQTSETLGWIKQDTCIQRYFTHEKHLTVESFQRLLKLVPSNVIHIFQNLKELTIKNCGSLVEVFESHGVDAKQMHAMVHYKLEALNLYFLPKLINLWKNYGGVLGFQKLRILNVQHCSNLCNLFPPSIARSLVQLRHLRVHSCHMMEEITTKEDEESEGANNAKIVFPLLNKLELRYVPNLKCFSSGNFNIDLPSCEEMIIEKCPKMTTFCYGSVTTAKLPHIYKGSYEYVEIMGDLNMTIYHANESLKVAQQTSETITCIEHGQELQPYLRSDTELVVQGSEKLLHCIPSNMLHRFQHLKQLKVHYDCGSLVEIFESEEVDENEDEGDTTTPYNFGLQELHLYDLPKLMHIWKYHGRILSFMNLKKLKIQHCHSLKNVLSPEMARSLSQLQELSLHECELMEVIITRDEKLSEEPNKVKIIFQALQWLTLYRLPNFRCFCSSTYHFELPSCHDITITECPKMEACHGNRGTSELPSVSFKTNGLRREI 2099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00650 2099 Pfam NB-ARC domain 179 415 IPR002182 GO:0043531
Vimu8g00650 2099 Gene3D Ribonuclease Inhibitor 520 941 IPR032675 -
Vimu8g00650 2099 SUPERFAMILY RNI-like 1465 1821 - -
Vimu8g00650 2099 SUPERFAMILY RNI-like 1250 1419 - -
Vimu8g00650 2099 PRINTS Disease resistance protein signature 196 211 - -
Vimu8g00650 2099 PRINTS Disease resistance protein signature 269 283 - -
Vimu8g00650 2099 PRINTS Disease resistance protein signature 639 655 - -
Vimu8g00650 2099 PRINTS Disease resistance protein signature 362 376 - -
Vimu8g00650 2099 Gene3D - 327 410 IPR042197 -
Vimu8g00650 2099 Gene3D Ribonuclease Inhibitor 1879 2088 IPR032675 -
Vimu8g00650 2099 Gene3D Ribonuclease Inhibitor 1625 1832 IPR032675 -
Vimu8g00650 2099 Gene3D Ribonuclease Inhibitor 990 1173 IPR032675 -
Vimu8g00650 2099 SUPERFAMILY L domain-like 489 879 - -
Vimu8g00650 2099 Gene3D Ribonuclease Inhibitor 1375 1586 IPR032675 -
Vimu8g00650 2099 Coils Coil 50 77 - -
Vimu8g00650 2099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 426 IPR027417 -
Vimu8g00650 2099 Gene3D - 411 500 IPR036388 -
Vimu8g00650 2099 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 975 1160 - -
Vimu8g00650 2099 SUPERFAMILY RNI-like 781 1156 - -
Vimu8g00650 2099 SUPERFAMILY L domain-like 1645 2060 - -
Vimu8g00650 2099 Gene3D - 164 326 IPR027417 -
Vimu8g00650 2099 FunFam Probable disease resistance protein At1g61300 164 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00650 Vimu-Chr8 13140415 13155643 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00650 - - vra:106757704 3901.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00650 8 13140415 13155643 Vimu8g00650 8 13140415 13155643 ECH