Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00447 ATGGCTTCATCAATGATCTCGTCTCCAGCTGTTACCACCGTTAACCGTGCCGGTGGCGGGATGGTGGCTCCGTTCACCGGGCTGAAGTCATTGGGTGGGTTCCCAACGAGGAAGACAAACAATGACATAACTTCGGTTGCAAACAACGGTGGAAGAGTGCAATGCATGCAGGTGTGGCCAACAATTGGGAAGAAGAAGTTCGAGACTCTGTCTTACCTGCCAGACCTGACTGAGGAACAACTGGGTAAGGAAGTAGACTACCTTCTTAGGAGCGGATGGATCCCTTGTTTGGAATTCGAGTTGAGCCATAAGGACGCTTTCCCACACCGTGAGAACAACAGGTCACCTGGATACTATGATGGAAGGTACTGGACCATGTGGAAGCTGCCTATGTATGGCTGCACTGATTCTTCTCAGGTTCTCCAGGAGCTTCGGGAGGCCAGGACTGCCCACCCCGACGGCTTCGTCCGTATCGTTGGATTTGACAGTGTTCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACCTGGCTACTAA 543 0.5193 MASSMISSPAVTTVNRAGGGMVAPFTGLKSLGGFPTRKTNNDITSVANNGGRVQCMQVWPTIGKKKFETLSYLPDLTEEQLGKEVDYLLRSGWIPCLEFELSHKDAFPHRENNRSPGYYDGRYWTMWKLPMYGCTDSSQVLQELREARTAHPDGFVRIVGFDSVRQVQCISFIAYKPPGY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00447 180 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 56 180 - -
Vimu8g00447 180 Pfam Ribulose bisphosphate carboxylase, small chain 67 177 IPR000894 -
Vimu8g00447 180 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 42 IPR024680 -
Vimu8g00447 180 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 65 178 IPR000894 -
Vimu8g00447 180 SUPERFAMILY RuBisCO, small subunit 56 179 IPR036385 -
Vimu8g00447 180 Gene3D Ribulose bisphosphate carboxylase, small subunit 56 180 IPR036385 -
Vimu8g00447 180 PRINTS RuBisCO small subunit signature 65 91 IPR024681 -
Vimu8g00447 180 PRINTS RuBisCO small subunit signature 117 146 IPR024681 -
Vimu8g00447 180 PRINTS RuBisCO small subunit signature 44 62 IPR024681 -
Vimu8g00447 180 PRINTS RuBisCO small subunit signature 151 177 IPR024681 -
Vimu8g00447 180 PRINTS RuBisCO small subunit signature 18 35 IPR024681 -
Vimu8g00447 180 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 178 IPR024681 -
Vimu8g00447 180 CDD RuBisCO_small 65 177 IPR000894 -
Vimu8g00447 180 SMART RuBisCO_small_2_a 66 177 IPR000894 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00447 Vimu-Chr8 10420823 10421619 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00447 K01602 - gmx:100500504 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00447 8 10420823 10421619 Vimu8g00447 8 10420823 10421619 ECH