Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00218 ATGGTGGTTAGTGCCTCGTATGAGCAGGCTTTGGTGGATGCACGCAAGCTTATTGAGCGTGAAATGGAAAGATTCAAGATCTGTGAGAAGGAGACGAAGACAAAAGCATTCTCTAAAGAAGGCTTAGGTCAACAACCCAAAACTGATCCTAGAGAAAAGGCTAAATCGGAGACAAGGGATTGGTTGAACAATGTGGTTGGGGAATTAGAGTCTCAGATCGATAACTTTGAAGCTGAGCTTGAAGGACTTTCTGTAAAGAAAGGAAAGAACAAGCCACCCAGATTGGCTCATGTAAAGAAATGTGAATTTATCTTGAGGCTACTTGATAATGATGAACTAAGTCCAGAGCAGGTGAATGATGTCAAAGATTTCTTGGATGACTATGTAGAGCGTAATCAGGAGGACTTTGAAGAATTTAGTGATGTTGATGAGCTATATAGTTCATTACCCCTAGATAAGGTGGAGTCACTTGAAGATATTGGAACAATTCCCCCTGGTCTTGCTAAGGTGGCACCTGTTCTTAGCTTGAAGCCTCTGCCAACATCAGCTTCAGCATCACAAACATCTGAGCAAGCTGATGATACAGCTTCTCAGGATAGCAATTCTGATGTTGGTGCAAGAACTCCACCTCCTAAAAGTAGTACAGTTAGTTCTACTGCAACAACACCAGTGGCGAATTTTGCTACTCCTGTTTCTATAAATGTTATGGTGCCTAACTTGTCAAGTCCACCGCCCATTTCATCTGTCACACCTGGTTCAAATTCTCTTCGGAGTTCCTTGGAAATTAGTAGTGCTGTCAATGCTTCATTTGTAAATCAGTCTAGCACTGTGAAAGAGGATGAGATTAATAGTTTCCCTGTCCGAAGACCATCTCCATCACTTTCTGATGTTGCACTCATAAGGAATATCAGCAGAAACAGCCTGTCAAATCAAATAACAAATAACATACCTGTTGTATCTGGGAACATGGTTTCCAGCAATGGGCCCCTTGGTTCAGTTTCTTCAACTTCTGAAATAACCAAGAGAAACATATTGGTTGCTGATGATAGACTCGGAAGCAATGGGATGGTGCCAACTCTCGTATCCCCTTTAAGTAATAGAATGATTATTCCTCAGGTTGCAAGGGGTACTGATGGAACTTCCTCAGTTGACTCTAGTAATGCCAATGAAGGTGCAACTTTGTCTGGGAGAGTTTTCTCCCCTTCTGCTATTCCTGGCATGCAATGGAGACTTGGAAGCCCCTTCCAGAATCAAAATGACGTGGTACACTTTTGCTCTTAA 1281 0.4223 MVVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKNKPPRLAHVKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDELYSSLPLDKVESLEDIGTIPPGLAKVAPVLSLKPLPTSASASQTSEQADDTASQDSNSDVGARTPPPKSSTVSSTATTPVANFATPVSINVMVPNLSSPPPISSVTPGSNSLRSSLEISSAVNASFVNQSSTVKEDEINSFPVRRPSPSLSDVALIRNISRNSLSNQITNNIPVVSGNMVSSNGPLGSVSSTSEITKRNILVADDRLGSNGMVPTLVSPLSNRMIIPQVARGTDGTSSVDSSNANEGATLSGRVFSPSAIPGMQWRLGSPFQNQNDVVHFCS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00218 426 MobiDBLite consensus disorder prediction 36 59 - -
Vimu8g00218 426 MobiDBLite consensus disorder prediction 180 221 - -
Vimu8g00218 426 MobiDBLite consensus disorder prediction 45 59 - -
Vimu8g00218 426 PANTHER CCR4 NOT-RELATED 9 417 IPR040168 GO:0030015
Vimu8g00218 426 MobiDBLite consensus disorder prediction 375 396 - -
Vimu8g00218 426 Coils Coil 59 86 - -
Vimu8g00218 426 MobiDBLite consensus disorder prediction 375 397 - -
Vimu8g00218 426 PIRSF NOT_su_3_5 7 424 IPR012270 GO:0006355|GO:0030015
Vimu8g00218 426 Pfam Not1 N-terminal domain, CCR4-Not complex component 9 152 IPR007207 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00218 Vimu-Chr8 6702786 6708703 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00218 K12580 - gmx:100780204 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03463 6 31407238 31417759 Vimu8g00218 8 6702786 6708703 PCT