Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04020 ATGAAACCAAACCTTTCTGCGTTCCTATTGTTGTTCCTTCTCCTTCTCCACCAATCCCTTTTGGCGAATGCGGTTCCTCCTCTTGCTAAAATTGGCCAAATCGGATACAAGTGGGGAAAAAAAGCTGCCAAAACAGTTTATGACTATTACCGCAAACACGACATTTCTTCTCCAGAACAAAACCAAACACTAAAGGAAATCAAAGGCTTGTCTCGAATCAAAGAGTACTTTTATAACTTTGGCTACCTTCAATCCTCTGAGACATTCAACGATATTTTGGACCAGCAAACAGTATCAGCCATCCACACCTACCAGCAATCTTTCAATCTCCAAGTTACAGGCGACCTAAACAACGAGACATTACAACTAATCTCACTACCCCGATGTGCTGTCCCCGACATGAATTTCACCTACAACTTCACCGAAAACGTGTCGTGGCCCAAAGCCGGTAACCAGTGGTTCGATAAGATAAACCTCACGTACGGTTTTCTTCCTACAAGTAATATCCCGGCCAACGCCACGAAAGTGTTCGGACAGGCATTCACGCGGTGGGCGAATGCCACAGGGCGTTTGATCCTCACGCAGACAAACTACACTGACGCTGACATTAAGGTTGGATTCTACGTACTCGATGACGTCTTTGACGCTGATGTGTTTGGCGTCAGCTTTATAAGGGAGGAATCTCCGTCTAACGTGAAGACGGCGGAGATACGTCTCAACGGGAACATGTCCTGGGCGCTGCCCAGTGAAAACAACAGCTTGTCGTGGGAGAATGATGTTCTGGACTTGGAGAGTGTGGCGATGCATGAGATAGGGCATTTACTTGGACTTGACCACTCTTTCTCGAATGAGTCTGTTATGTACCCTTACATTTTGCCATCACAGCAACGAAAGATACAACTCTCGAACATCGACAAGAACAAAATTCTTCAAAAGAACGTTGAATCCAATTCTGGTTATTGTGGAAGTTGGAGAGTGCTTGTAACTACCACCTTGTCCCTAGGATTTGGTTATATGGTGCTTCTAGCTTGA 1032 0.4535 MKPNLSAFLLLFLLLLHQSLLANAVPPLAKIGQIGYKWGKKAAKTVYDYYRKHDISSPEQNQTLKEIKGLSRIKEYFYNFGYLQSSETFNDILDQQTVSAIHTYQQSFNLQVTGDLNNETLQLISLPRCAVPDMNFTYNFTENVSWPKAGNQWFDKINLTYGFLPTSNIPANATKVFGQAFTRWANATGRLILTQTNYTDADIKVGFYVLDDVFDADVFGVSFIREESPSNVKTAEIRLNGNMSWALPSENNSLSWENDVLDLESVAMHEIGHLLGLDHSFSNESVMYPYILPSQQRKIQLSNIDKNKILQKNVESNSGYCGSWRVLVTTTLSLGFGYMVLLA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04020 343 SUPERFAMILY PGBD-like 69 134 IPR036365 -
Vimu7g04020 343 Pfam Matrixin 153 309 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vimu7g04020 343 Gene3D Collagenase (Catalytic Domain) 68 311 IPR024079 GO:0008237
Vimu7g04020 343 SMART col_5 149 316 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vimu7g04020 343 PANTHER MATRIX METALLOPROTEINASE 57 312 - -
Vimu7g04020 343 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 152 309 - -
Vimu7g04020 343 PRINTS Matrixin signature 124 137 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu7g04020 343 PRINTS Matrixin signature 266 291 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu7g04020 343 PRINTS Matrixin signature 177 192 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vimu7g04020 343 Pfam Putative peptidoglycan binding domain 72 123 IPR002477 -
Vimu7g04020 343 FunFam Metalloendoproteinase 5-MMP 62 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04020 Vimu-Chr7 38071219 38072250 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04020 - - vra:106753214 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04020 7 38071219 38072250 Vimu7g04020 7 38071219 38072250 ECH