Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04011 ATGAGAAACTATTTTCAGCTACTTTTCTTCACCCTATCCCTTCTATTGGGCCAATCCAGACCCGACCCAGACCCACTTCAAGATTACTGTGTTGCTGATAACAAAGCTGAATTTTTCCTTAATGGGGTGCCCTGTATCAACCCAGATAAAGTTACACCCTCACATTTTGTCACTTCTGCATTGTCTAAGAATGGTAACACCAGTAACCAATTCGGCTTCAGTGTCACAGCCACCAACACTGTTAATCTTCCTGGGCTTAACACATTGGGCCTGGTATTGACCCGGATTGATATAGCGGCGAATGGGATCGTGCCACCTCACTCGCATCCACGGGCCTCCGAAGTGACCACTTGCCTCAAGGGCCAGCTTCTTGTGGGCTTTATTGACACAAATAACCGTGTGTTTACCCAGAACCTGAAGCCCGGTGAGTCTTTTGTCTTTCCAAAGGGCCTGATACATTTCTTGTCGAATAATGAGTTAAGGGAACCGGCACTGGCCCTTTCTGGTCTAAATAGCCAGAACCCAGGTACTCAAATTGCATCACTTGCAACATTTGCTAGCAAACCTGCTATTTATGATGAAATTCTCAAGAAGGGTTTCCAAATTACTGGCAGAGAAGTGGAAACAATTCGTAGAAACCTTGGAGGATGA 651 0.4562 MRNYFQLLFFTLSLLLGQSRPDPDPLQDYCVADNKAEFFLNGVPCINPDKVTPSHFVTSALSKNGNTSNQFGFSVTATNTVNLPGLNTLGLVLTRIDIAANGIVPPHSHPRASEVTTCLKGQLLVGFIDTNNRVFTQNLKPGESFVFPKGLIHFLSNNELREPALALSGLNSQNPGTQIASLATFASKPAIYDEILKKGFQITGREVETIRRNLGG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04011 216 CDD cupin_OxOx 22 214 IPR001929 GO:0030145
Vimu7g04011 216 FunFam germin-like protein subfamily 2 member 1 21 216 - -
Vimu7g04011 216 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Vimu7g04011 216 PRINTS Germin signature 137 157 IPR001929 GO:0030145
Vimu7g04011 216 PRINTS Germin signature 107 127 IPR001929 GO:0030145
Vimu7g04011 216 Pfam Cupin 61 207 IPR006045 -
Vimu7g04011 216 ProSitePatterns Germin family signature. 102 115 IPR019780 GO:0030145
Vimu7g04011 216 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 19 209 - -
Vimu7g04011 216 SMART Cupin_1_3 59 208 IPR006045 -
Vimu7g04011 216 SUPERFAMILY RmlC-like cupins 22 213 IPR011051 -
Vimu7g04011 216 Gene3D Jelly Rolls 21 216 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04011 Vimu-Chr7 37913578 37914228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04011 22 215 Miscellaneous Gene Families AT5G39130 44.949 3.94e-53 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04011 - - gmx:100500154 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04011 7 37913578 37914228 Vimu7g04011 7 37913578 37914228 ECH