Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04005 ATGGCCACCAACACTCATTTCATCCTCACACTCCAACCACGTTACCCTTTCTCTCTTTCATCTTCTTCTTTCCCATTTCTTCCAACTAACACCGCTCTCTCTTTCTCTCACCTTCGCTTTGGATATCTTCCTCTTTCCCTCAATTTCCGTGCCTCCTTCTCCTTTAAGTCCCCTACCTCAACCGTTAGCGCATTCTCCGACGCCGAGGAGGACGAAGAAGAGGAAGAAGAAGAAGACGAAGAAGACGAAGAAGAAGAAGATGAAGACGACGACGTTGCTGCCGACGAGTACGACGACGTATCTGCTGATGCTTCCGAGGAAGACGCTGGTGTGTTTGCTCGCCACGACGGATTCAAGTGGCAGAGAGTCGAGAAGCTCTGCAACGAAGTCAGGGAGTTCGGCGCGGATATCATCGACGTCGAAGAACTGGCCTCCATCTACGATTTTCGTATCGACAAGTTTCAGGCGATACTGGCGTTTCTGAGAGGCTCCTCGGTAGTGGTTTCTGCTCCGACGAGCAGCGGGAAGACGCTGATTGCGGAAGCGGCGGCGGTGGCTACGGTTGCTAGGGGACGGCGAATATTCTACACGACGCCGCTCAAGGCGTTGTCCAATCAGAAGTTTCGGGAATTCCGTGAGACTTTTGGTGACAGTAATGTTGGCCTTCTTACGGGTGATTCTGCTGTGAACAAGGATGCTCAGGTTTTGATTATGACCACGGAGATATTGCGCAACATGTTGTATCAGAGTGTTGGCAATGTTTCTTCTAGAAGTGGACTTGTGAATGTTGATGTGATTGTTTTGGATGAAGTTCATTATCTTAGTGACATATCTCGCGGTACAGTCTGGGAGGAGATTGTTATTTATTGCCCAAAAGTAGTTCAACTAATTTGCCTGTCAGCAACTGTTGCAAATCCAGATGAGTTGGCTGGCTGGATTGGTCAGATTCATGGTAAAACTGAATTGGTAACATCCTCAAAACGCCCAGTTCCATTGACTTGGCATTTCTCTATGAAGAATTCCTTATTTCCACTTCTTGATGAGAAAGGAACGCAAATGAACAGGCTGTTGTCCAAAGGTGATCATTCCAAGTATTTCCTGGCCCACAATGAGACTTATTATCAATATAGATGGGGCTTACACATAGTGGGGAAGGGGCCTATGTATTTGCATGACTCCTGCGGATCTGAACCTATCTACACCTGGAACCAATCTCCTATAGGTCCTGCCACCACGCCGCAGACGGGAGCTCGTGTGGAACCTTTTCTTTCTGGCGTAACAGCGGTGGAATGTAAAAAAAGATTACGGTCGCGTAACATAAGGGCCGGAGGTACGGATCACAAGTGGAACGCTAAGCAGGGGGGAGGGGAAAGGCTTGGGTTGGGCCTATCTATCCCGATAGGACCTCCTAAAGGAACGGGAGCTGTTGAGAGGTTCCATATTGCCGAGCCGAAGGGCAGCACTTCTGTACGTGATCGTAGTATGTCACGTTGTCTTGTCCCCGCAGCATTGAAAAGTACCTATGCACTATTTTCGGGGGGGGGGGGATCTTTGGCTCTATCGAACATACAGGGAATTGGAGGTAGCATTCCATCGATGTTAAGTCATGGACTGGTTCCTTCAGCCCTTTTTCTATGTGTTGGTGTTCTATATGACAGACATAAGACTCGACTTGTTAGATATTACAGAGGGTTAGTGAGCACCATGCCAAATCTCTCTACCATTTCCTTCTCTTCCACTTTGGCCAATATGAGTTCACTTGGTACTAGCAGCTTTATCGGGGAATGTCCCATCTCAGTAGGAGCTTTCCAAAGAAATAGTTTAGTAGCCACATTAGCAGCGCTTAGGATGATTTTAGGCATGGCGTATTCCCTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAAGCCGATTTCCTCCATAAATTCTTCGATCCAAATGGCAGAGAAGTTTCCATATTTATACCTTTTCTTGTTGGAGGGGCGTCTGTTGAACTACCAAAGAAAGAAGAAACCAATGTGGGACCGAGAGGGGGGCAACCATGGATGGTACTTCTCGACCGTGTCTCTGAGGGACAGTTGAACGAGCGACTCATGGATGCTGCCAGACTCCAAGTTCTTATGGCAGAGCGCGAGGAGATTTATCATCAATATGATGATGGAATGGAAACCAGAAGCACGACCGACCGGGGTCCAAGATACAGTAGTATCGTAAGCATGAGACTTTTTGGTCGTACCGGTGAACCAGATGGCCGTGGCGATGGAATTTGGGACGGAGGACTCGTATTGGGGAGGGGGAAGGAGTCTAAACCAATGGACATTAATGAACCATCATTGATGGACGTTGCACATGTAACGATCAATTCGACTCAAGTCCGGGGGCCGGCCGCTGCAGAGCTGCGGGGTATAGCGGCACCCTCGACTGGCGCCATTCCCGGATCTAGCAGCAGATGGGCGGGCCTGAATTCAGACCAGACTCTTCTTTATTTGAGCTGCTCCCATGCACGCAGACCGGAAGATTTCAGTTGTCCTGGACTAGACAAGAAGCTGTCATTCAATTATTTACAACATCAAGCTGCAGGAGCTAAACCTTACAAAGATGATTGGTCTAGAAAGAGGAACTCCCGGAAACGGGGAACACGCTTTAGCTATGATAGTGATGATAGCATGTTTGAACAACGTTCTCTTTCAAAGAATGACATAAATGCCATACGTCGATCTCAAGTTCCTCAAGTAATTGATACATTATGGCAACTTCAGTCCAGGGATATGCTGCCAGCTATTTGGTTTATTTTTAGCAGGAAGGGTTGTGATGCAGCTGTGCAATATCTTGAAAGTTGCAAACTTTTAGATGAGTGTGAATCAAGTGAGGTTGAACTAGCCTTGAAGAAGTTTCGCAAGCAATATCCTGATGCTGTCAGAGAATCAGCTATAAGAGGACTTTTGCAAGGGGTTGCCGCACATCATGCTGGATGTCTACCTTTGTGGAAGGCATTCATAGAAGAGTTGTTTCAAAGAGGACTTGTTAAAGTTGTTTTTGCTACAGAAACCTTGGCTGCTGGAATTAATATGCCTGCTAGAACAGCTGTTATTTCATCTCTCAGCAAAAGGAGTGACAGTGGGCGTATAGCATTAAGCCCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAGAGTGGTCATGTAGTTCTCATCCAAACTACTAACGAAGGAGCTGAGGAGGGCTGCAAAGTTCTGTTTGCTGGACTAGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGGATGGTTTTGAATCTTCTTGCTGGTGTGAAAGCCATTCAGTGGTCAAATGAATCAGGTAACATGAAACCTTCCACGGGAAGAACTTTGGAAGAAGCTAGGAAATTAGTTGAGCAAAGTTTTGGGAATTATGTTAGTAGCAATGTAATGCTGGCTGCTAAAGAGGAACTTAATAAAATTGAGAAAGAAATTCAGTTGCTGATGTCAGAAACTACTGATGAAGCTATTGATAGAAAAACCAGGGAGGCCTTAGCACCACGGCAATACAAGGACATTGCAGAATTACTGGAAGATTTAAGATCAGAAAAGCGTGTTCGGACTAAGTTGCGTAAACAGGTGGAAGCAAAGAGAATGTCTGCCCTGAAACCTTTGTTGGAGGAGACTGAAAGTGGACATTTGCCATTTTTATGCTTGCAGTATAGAGATGCTGAAGGAGTTGAACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTTGACTCCCTTAATGCTTCAAAACTCAAAACTATGATTTCTTCTGTTGATTCTTTTGCATTGAATTTAGCAGAAGCAGAGCCAAGTGTTGCAGATTCTGCACTGAATAAAGATATTAAACCTTCATACCATGTGGCTCTTGGTTCAGATAACACTTGGTATCTATTTACAGAAAAGTGGATTAAGACAGTATATGGGACAGGCTTTCCTAATGTTCCATTGGGTCAAGGGGATGCTCGACCTCGAGAAATTATGAGCACCCTACTTGATAACGGTGATATGAATTGGGATAAGCTTTCTCAATCCGAGCATGGTGGTTTATGGTTCATGGAAGGATCTCTTGATACATGGTCTTGGAGCTTGAATGTTCCTGTTTTGAGTAGCTTGGCGGAAAATGACGAACTACTACTAAAGTCTCAAGATTATAAAGATGCCATTGAATGTTACAAAGAACAAAGAAATAAAGTTTCACGGTTGAAGAAAAAGATATCTCGTAGTGAAGGCTATAAAGAATATTTTAAAATTATAGGCGCAGTCAAGTTTGTTGAGGAGAAAATCAAGCGCCTGAAGAATAGATCTAAACGTTTGATTAATAGGATTGAACAGATTGAACCCTCAGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATTCATGAAATCAGAGCTTTAGATATCAATACACATGTTATATTTCCACTTGGTGAAACCGCTGGTGCAATTCGAGGAGAAAATGAGCTATGGCTTGCGATGGTTCTTCGCAATAAAATTTTACTAGATCTCAAACCTGCGCAGCTCGCAGCAGTGTGCGCAAGTTTGGTGTCCGTGGGTATCAAAGTCCGACCCTGGAAGAATAACAGTTACATTTATGAGCCATCTGCAACTGTAACGAAATTTATAACATTATTAGATGAACAAAGAAATGCCTTATTGGCATTGCAGGACAAACATGGGGTGACAATCTCTTGCTGTTTGGATAACCAGTTTTGCGGCATGGTTGAGGCCTGGGCTTCTGGGTTGACATGGAGAGAAATAATGATGGACTGTGCAATGGATGATGGCGATTTAGCTCGTCTCCTTCGGCGAACCATTGATCTATTAGTTCAGATTCCAAAGTTGCCAGATATTGATCCATTGTTGCAGCGCAATGCAAAGGCTGCTTCTGCTGTTATGGACCGGCCTCCAATAAGTGAACTTGTGGGGTAA 4980 0.449 MATNTHFILTLQPRYPFSLSSSSFPFLPTNTALSFSHLRFGYLPLSLNFRASFSFKSPTSTVSAFSDAEEDEEEEEEEDEEDEEEEDEDDDVAADEYDDVSADASEEDAGVFARHDGFKWQRVEKLCNEVREFGADIIDVEELASIYDFRIDKFQAILAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKVVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSMKNSLFPLLDEKGTQMNRLLSKGDHSKYFLAHNETYYQYRWGLHIVGKGPMYLHDSCGSEPIYTWNQSPIGPATTPQTGARVEPFLSGVTAVECKKRLRSRNIRAGGTDHKWNAKQGGGERLGLGLSIPIGPPKGTGAVERFHIAEPKGSTSVRDRSMSRCLVPAALKSTYALFSGGGGSLALSNIQGIGGSIPSMLSHGLVPSALFLCVGVLYDRHKTRLVRYYRGLVSTMPNLSTISFSSTLANMSSLGTSSFIGECPISVGAFQRNSLVATLAALRMILGMAYSLWLYNRVVSGNLKADFLHKFFDPNGREVSIFIPFLVGGASVELPKKEETNVGPRGGQPWMVLLDRVSEGQLNERLMDAARLQVLMAEREEIYHQYDDGMETRSTTDRGPRYSSIVSMRLFGRTGEPDGRGDGIWDGGLVLGRGKESKPMDINEPSLMDVAHVTINSTQVRGPAAAELRGIAAPSTGAIPGSSSRWAGLNSDQTLLYLSCSHARRPEDFSCPGLDKKLSFNYLQHQAAGAKPYKDDWSRKRNSRKRGTRFSYDSDDSMFEQRSLSKNDINAIRRSQVPQVIDTLWQLQSRDMLPAIWFIFSRKGCDAAVQYLESCKLLDECESSEVELALKKFRKQYPDAVRESAIRGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRSDSGRIALSPNELLQMAGRAGRRGIDESGHVVLIQTTNEGAEEGCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIQWSNESGNMKPSTGRTLEEARKLVEQSFGNYVSSNVMLAAKEELNKIEKEIQLLMSETTDEAIDRKTREALAPRQYKDIAELLEDLRSEKRVRTKLRKQVEAKRMSALKPLLEETESGHLPFLCLQYRDAEGVEHSIPAVFLGKVDSLNASKLKTMISSVDSFALNLAEAEPSVADSALNKDIKPSYHVALGSDNTWYLFTEKWIKTVYGTGFPNVPLGQGDARPREIMSTLLDNGDMNWDKLSQSEHGGLWFMEGSLDTWSWSLNVPVLSSLAENDELLLKSQDYKDAIECYKEQRNKVSRLKKKISRSEGYKEYFKIIGAVKFVEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSNVIHEIRALDINTHVIFPLGETAGAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSVGIKVRPWKNNSYIYEPSATVTKFITLLDEQRNALLALQDKHGVTISCCLDNQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDPLLQRNAKAASAVMDRPPISELVG 1659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04005 1659 MobiDBLite consensus disorder prediction 866 885 - -
Vimu7g04005 1659 Pfam DSHCT (NUC185) domain 1488 1654 IPR012961 -
Vimu7g04005 1659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 315 IPR027417 -
Vimu7g04005 1659 Pfam DEAD/DEAH box helicase 155 304 IPR011545 GO:0003676|GO:0005524
Vimu7g04005 1659 MobiDBLite consensus disorder prediction 66 93 - -
Vimu7g04005 1659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 909 1076 IPR027417 -
Vimu7g04005 1659 Coils Coil 1437 1457 - -
Vimu7g04005 1659 Gene3D - 1438 1651 - -
Vimu7g04005 1659 Coils Coil 1193 1213 - -
Vimu7g04005 1659 Gene3D - 844 1091 IPR027417 -
Vimu7g04005 1659 SMART helicmild6 957 1062 IPR001650 -
Vimu7g04005 1659 SMART ultradead3 145 335 IPR014001 -
Vimu7g04005 1659 Pfam Proton-conducting membrane transporter 519 615 IPR001750 -
Vimu7g04005 1659 Coils Coil 65 90 - -
Vimu7g04005 1659 Coils Coil 1151 1171 - -
Vimu7g04005 1659 PRINTS NADH-ubiquinone oxidoreductase subunit 4 signature 577 603 IPR003918 GO:0008137|GO:0042773
Vimu7g04005 1659 PRINTS NADH-ubiquinone oxidoreductase subunit 4 signature 525 544 IPR003918 GO:0008137|GO:0042773
Vimu7g04005 1659 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 321 IPR014001 -
Vimu7g04005 1659 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 1441 1651 - -
Vimu7g04005 1659 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 61 1654 - -
Vimu7g04005 1659 MobiDBLite consensus disorder prediction 61 93 - -
Vimu7g04005 1659 CDD SF2_C_Ski2 906 1074 - -
Vimu7g04005 1659 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 909 1108 IPR001650 -
Vimu7g04005 1659 Coils Coil 1390 1420 - -
Vimu7g04005 1659 SMART DSHCT_2 1484 1658 IPR012961 -
Vimu7g04005 1659 Gene3D - 112 328 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04005 Vimu-Chr7 37861891 37872098 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04005 K26077 - gmx:100780908 1468.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04005 7 37861891 37872098 Vimu7g04005 7 37861891 37872098 ECH