Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03978 ATGGGCTATCAGCTGGTACAGATAGTTACACTGCTGACAGTGATAGCATTTGGAGGAGCATTAAGGAAAGTAAGAGGAGAATGCAACTCAGATGATTTGGAAGGTTTGATGGCATTCAAGAATGGCATTCAGATGGATACATCTGGCCGGTTGGCAAAGTGGATTGGTAGGAGCTGCTGTGAATGGGAAGGTGTTGTCTGTGACAATGCAACCACCAGAGTGACACAGATCCTTCTTCCAGGCCTCAATGAAAAAGATTTTGTTCAAACACAAATGGTGGGCCAGCTTTCTCCTTCCATGACACTCCTCACCTCTCTTGAAATCCTTGATCTCGGTGGCTTAGCAGGCCTCAGTGGAGCAATTCCCCAAACAATTGGGTTGCAAATGCCAAAGCTCCAAAAGCTTTACCTTTATGGTAACAATTTAACTGGCCCGGTACCAGAAAGCATTGGTGATTTTCCAAACCTCCAGGAACTGGCACTGCATGAAAATAGGATATCTGGGTCAATCCCTTCTAGCCTTGGAAGTTTAAGAAAACTCAAAAGGCTGCTGCTTTACTCAAACCAAATTTCAGGTACAATACCCTTCTCACTTGGGAGTTTGACCAATTTGGTAGAACTGGATGTCCATGACAATGCTCTTATGGGTCATATACCCAACAGCATTGGTCAGATGCTGTCTTTAGAGAAGCTTGATCTTTCAAGCAATATGTTAAGTGGAAGCATACCTTCTTCAATAACCAATTTAACTGCCATTTCAGTTTTGTATTTTGACACCAACTATCTTGAGGGAACCATTCCCTTTCCCTCAAGACCTGGTGAAATGCCTTCACTGAGCTTCCTAAGACTCCACAATAACCACCTTAGTGGAAACATACCTCCCAGTTTTGGATACCTGGTTTCTCTTCAAAGAGTTTCATTATCAAACAACAAACTTGAAGGAGCATTGCCTTCTAGTTTGGGCAATTTGCATTCTTTGACAGAGCTATACCTCAGTGACAACTCCTTCTCTGGCCAAATACCAAAATCAATAGGCCAGCTCTCTCAGCTCATAATGTTGAACATTTCCAACAATTTGATTCAATGGCCATTGCCTCAGGAGATGTCTTCCCTTCAAAACCTCCAGACACTTGATCTATCTTTCAACCCTTTGAACCTCTCTTCCATTCCACCATGGCTTACAAGTATGTCATCTCTTTCCCGTCTTTACCTCGCAGCCTGTGGCATCAAAGGCCAAATTCCAGACTCACTGCAAACAACACAGAGTCCAATACAGGAACTAGATTTATCAGGGAACCTTCTCAGTGGACCAATACCATCATGGTTAGGATCCTTCAGTCAGCTCTACCTGCTAAACCTCTCAAGTAATTCACTTGAGTTACACATACCTGATTCCCTCACAAACTTGCCTGATCTTGGTGTTCTTGATCTTCACTCAAACAAGTTAACAGGCTCCATAACTGGAGTATTTAACACTTCTCAACAAGGTACTTCTGGGGGATCACTGACATACATTGATCTTTCTGATAACAACTTCTCAAGTGGAGTTGAGGCAATTGGTGTGGGAGAACAGTTAAACATTCAACATCTTAATTTGTCTCATAACCTTCTGAAGGGCACATTGCCAGGTTCCCTTGGGAGGCTGAACTCCATTCACAGTTTGGATTTGAGCTTCAATGAATTAGCTTCCAACTTACCTGAAGTCCTGGCAAAGTTAACCTTGTTGGAGAATCTGAAGCTGCAAAGTAATCATTTCAGTGGAAACATACCCAATGGATTTCTCAAGCTGAGAAAGCTGAAGGAATTGGACTTATCAGATAATGTACTTGAAGGGGAAATTCCAAAGGGTAAGCCTCTGATTGATTTTCCTGGGAGTACTTATTCTGGAAATAAAGGTTTGTGTGGAAAGCCTCTCAGTCCGTGTAAACTTTGA 1932 0.4255 MGYQLVQIVTLLTVIAFGGALRKVRGECNSDDLEGLMAFKNGIQMDTSGRLAKWIGRSCCEWEGVVCDNATTRVTQILLPGLNEKDFVQTQMVGQLSPSMTLLTSLEILDLGGLAGLSGAIPQTIGLQMPKLQKLYLYGNNLTGPVPESIGDFPNLQELALHENRISGSIPSSLGSLRKLKRLLLYSNQISGTIPFSLGSLTNLVELDVHDNALMGHIPNSIGQMLSLEKLDLSSNMLSGSIPSSITNLTAISVLYFDTNYLEGTIPFPSRPGEMPSLSFLRLHNNHLSGNIPPSFGYLVSLQRVSLSNNKLEGALPSSLGNLHSLTELYLSDNSFSGQIPKSIGQLSQLIMLNISNNLIQWPLPQEMSSLQNLQTLDLSFNPLNLSSIPPWLTSMSSLSRLYLAACGIKGQIPDSLQTTQSPIQELDLSGNLLSGPIPSWLGSFSQLYLLNLSSNSLELHIPDSLTNLPDLGVLDLHSNKLTGSITGVFNTSQQGTSGGSLTYIDLSDNNFSSGVEAIGVGEQLNIQHLNLSHNLLKGTLPGSLGRLNSIHSLDLSFNELASNLPEVLAKLTLLENLKLQSNHFSGNIPNGFLKLRKLKELDLSDNVLEGEIPKGKPLIDFPGSTYSGNKGLCGKPLSPCKL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03978 643 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vimu7g03978 643 SMART LRR_typ_2 299 322 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 129 152 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 275 298 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 469 492 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 371 396 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 153 177 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 323 347 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 548 571 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 201 224 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 596 618 IPR003591 -
Vimu7g03978 643 SMART LRR_typ_2 225 249 IPR003591 -
Vimu7g03978 643 SMART LRR_sd22_2 596 611 - -
Vimu7g03978 643 SMART LRR_sd22_2 323 349 - -
Vimu7g03978 643 SMART LRR_sd22_2 177 209 - -
Vimu7g03978 643 SMART LRR_sd22_2 371 388 - -
Vimu7g03978 643 SMART LRR_sd22_2 225 251 - -
Vimu7g03978 643 SMART LRR_sd22_2 548 567 - -
Vimu7g03978 643 Gene3D Ribonuclease Inhibitor 368 643 IPR032675 -
Vimu7g03978 643 PRINTS Leucine-rich repeat signature 228 241 - -
Vimu7g03978 643 PRINTS Leucine-rich repeat signature 371 384 - -
Vimu7g03978 643 Pfam Leucine rich repeat 424 482 IPR001611 GO:0005515
Vimu7g03978 643 Pfam Leucine rich repeat 276 335 IPR001611 GO:0005515
Vimu7g03978 643 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Vimu7g03978 643 Gene3D Ribonuclease Inhibitor 29 194 IPR032675 -
Vimu7g03978 643 FunFam Leucine-rich repeat receptor protein kinase EMS1 195 268 - -
Vimu7g03978 643 Gene3D Ribonuclease Inhibitor 300 367 IPR032675 -
Vimu7g03978 643 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515
Vimu7g03978 643 Pfam Leucine Rich Repeat 373 391 IPR001611 GO:0005515
Vimu7g03978 643 PANTHER UNNAMED PRODUCT 87 514 - -
Vimu7g03978 643 FunFam Nuclear pore complex protein NUP107 29 194 - -
Vimu7g03978 643 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 364 643 - -
Vimu7g03978 643 FunFam Piriformospora indica-insensitive protein 2 269 363 - -
Vimu7g03978 643 Gene3D Ribonuclease Inhibitor 195 294 IPR032675 -
Vimu7g03978 643 SUPERFAMILY RNI-like 388 641 - -
Vimu7g03978 643 SUPERFAMILY L domain-like 56 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03978 Vimu-Chr7 37512686 37515375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03978 4 643 Receptor kinase-like Gene Family AT4G08850 31.918 6.85e-83 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03978 - - gmx:100799647 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03978 7 37512686 37515375 Vimu7g03978 7 37512686 37515375 ECH
Vimu7g03978 7 37512686 37515375 Vimu7g03978 7 37512686 37515375 PCT