Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03974 ATGAAGAGGGGCAGTAAAGTAGACCTTTTTGTGCTACCCAACAGGCTCACACTGCTTCAGATTTTCATGGTGGTGATGCTCTTTTACTTGCTCTTCATGAGCTTCGAAATCCCTCTCGCTTTCAGAGCCGGGTTGGTTTCCGATAATGGCGCTGTTTTTCTCACCGACGCATTGCCCATGTCCATGCCGCTCTTGCTTGAAGAACCGAACCACGGGGTACAAATTCGAGGGCCCAGGGGGTTGAAGTTGGAGAAAGTTTCCTCCTTGAGGTTCAACGGGAGCTTCTCGGAGGGTTCGGAGCTGCACAAGGTGGCCCGGCACGCATGGGTCGCTGGGGAGAAGCTCTGGGGGGATGTGGTGAGTGGGAAAGTGAAGAGCTTTGCAAAGGTGACGGTTGAAAACGGGTCAGACTCGTGCCCGAATTCGGTTTCGGTTTCCGGGGCGGAGTTTCGGGGGAAAGGGGTGATGGTGCTGCCGTGCGGACTGACGCTCTGGTCGCACGTGACGGTGGTGGGGACGCCACGGTGGGCGCATGCGGAGAGGGACCCTAAGATAGCGGTCGTGAGGGATGGGGATGAGGCGGTGATGGTGTCGCAGTTCATGATGGAGTTGCAGGGATTGAAGGCTGTGGACAAAGAGGAACCGCCGAGGATTCTGCATTTTAATCCGAGGCTGAGAGGGGATTGGAGTGGGAAGCCTGTGATTGAGCAGAATACTTGCTACAGGATGCAGTGGGGTTCTGCTCTCAGGTGTGAGGGGTGGAAGTCTCGAGCGGATGAGGAAACTGTTGATGGACATGTAAAATGTGAAAAGTGGATTCGGGATGACAACAATCGTTCTGAAGAGTGGAAGGCAACATGGTGGCTAAACAGATTGATAGGACGAAAAAAGAAGGTGACAATTGACTGGCCATATCCTTTTGCAGAGGGTAAGTTATTTGTTCTCACCATAAGTGCTGGCTTGGAAGGTTACCATGTTAGTGTGGATGGAAGGCATGTGACATCCTTTCCCTATCGCACGGGATTTGCTCTTGAGGATGCTACTGGACTATCCATAAATGGGGATGTTGATGTGCACTCTATATTTGCTGCTTCCTTACCTACATCACATCCTAGCTTTGCTCCACAGATGCATCTTGAATTGCTTCCTCAGTGGAAAGCTCCTTCACTTCACAATGTGAATGTGGATCTTTTCATCGGTATTCTTTCTGCTGGAAATCATTTTGCTGAACGGATGGCTTTATTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTGGAGCAGTTCAACAGCACAAGAGCAGTAGAATATGTGCACAACTTGAAGTTCTGTCAATTTGGGTGTGTTGAAGAGTACTACACTGCGCATTACCAATCACCAAGACAAATGACATGCATGTGGGAAAAATTGCAACAACAAGGAAAACCACTATGTTGCAACATGAGATGA 1449 0.499 MKRGSKVDLFVLPNRLTLLQIFMVVMLFYLLFMSFEIPLAFRAGLVSDNGAVFLTDALPMSMPLLLEEPNHGVQIRGPRGLKLEKVSSLRFNGSFSEGSELHKVARHAWVAGEKLWGDVVSGKVKSFAKVTVENGSDSCPNSVSVSGAEFRGKGVMVLPCGLTLWSHVTVVGTPRWAHAERDPKIAVVRDGDEAVMVSQFMMELQGLKAVDKEEPPRILHFNPRLRGDWSGKPVIEQNTCYRMQWGSALRCEGWKSRADEETVDGHVKCEKWIRDDNNRSEEWKATWWLNRLIGRKKKVTIDWPYPFAEGKLFVLTISAGLEGYHVSVDGRHVTSFPYRTGFALEDATGLSINGDVDVHSIFAASLPTSHPSFAPQMHLELLPQWKAPSLHNVNVDLFIGILSAGNHFAERMALFKMEDVSMGMWVEQFNSTRAVEYVHNLKFCQFGCVEEYYTAHYQSPRQMTCMWEKLQQQGKPLCCNMR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03974 482 FunFam Hydroxyproline O-galactosyltransferase GALT4 153 271 - -
Vimu7g03974 482 SUPERFAMILY Concanavalin A-like lectins/glucanases 156 362 IPR013320 -
Vimu7g03974 482 SMART Gal_bind_lectin_2 158 363 IPR001079 GO:0030246
Vimu7g03974 482 Gene3D - 191 362 - -
Vimu7g03974 482 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 154 364 IPR001079 GO:0030246
Vimu7g03974 482 PANTHER GALECTIN 120 362 IPR044156 -
Vimu7g03974 482 CDD GLECT 158 362 IPR001079 GO:0030246
Vimu7g03974 482 FunFam Hydroxyproline O-galactosyltransferase GALT2 278 362 - -
Vimu7g03974 482 Pfam Galactoside-binding lectin 155 362 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03974 Vimu-Chr7 37487341 37492515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03974 411 482 Glycosyltransferase AT1G74800 71.233 2.45e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03974 K20843 - gmx:100803219 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03974 7 37487341 37492515 Vimu7g03974 7 37487341 37492515 ECH
Vimu7g03974 7 37487341 37492515 Vimu7g03974 7 37487341 37492515 PCT