Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03911 TTGTGGCTTGTGAGTATGTCGACTCCTGCAAGAAAGAGGCTCATGAGGGATTTTAAAAGAGTGCAACAAGATCCTCCAGCTGGCATCAGTGGGGCTCCCCATGAGAATAATATTATGCTTTGGAATGCGGTTATATTTGGACCAGATGACACCCCTTGGGATGGAGGAACATTTAAGTTAACACTTCAGTTCACAGAGGAATATCCTAATAAACCACCTGTGGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACAGTGATTACAATGGATTTCCAGTTCTGATCTCCTTTCCCTTTTCAATTTTAGTTTATGCAGATGGAAGCATATGTTTGGACATTTTGCAAAATCAATGGAGTCCAATTTATGATGTAGCTGCAATACTTACCTCAATTCAGTCTTTGCTTTGTGATCCAAACCCAAACTCTCCAGCAAATTCAGAAGCTGCAAGGATGTTTAGTGAAAACAAACGTGAATACAACAGAAGAGTACGAGATATTGTTGAGCAGAGTTGGAGTGCTGATTAG 525 0.4038 MWLVSMSTPARKRLMRDFKRVQQDPPAGISGAPHENNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEEYPNKPPVVRFVSQMFHPNSDYNGFPVLISFPFSILVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRDIVEQSWSAD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03911 174 CDD UBCc 12 167 IPR000608 -
Vimu7g03911 174 Pfam Ubiquitin-conjugating enzyme 102 166 IPR000608 -
Vimu7g03911 174 Pfam Ubiquitin-conjugating enzyme 13 90 IPR000608 -
Vimu7g03911 174 SUPERFAMILY UBC-like 4 172 IPR016135 -
Vimu7g03911 174 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 9 172 IPR000608 -
Vimu7g03911 174 SMART ubc_7 12 172 - -
Vimu7g03911 174 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 8 171 - -
Vimu7g03911 174 Gene3D Ubiquitin Conjugating Enzyme 4 170 IPR016135 -
Vimu7g03911 174 FunFam Ubiquitin-conjugating enzyme E2-17 kDa 6 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03911 Vimu-Chr7 36648425 36650218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03911 12 142 Miscellaneous Gene Families AT1G17280 27.612 1.37e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03911 K10573 - zof:122009570 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03911 7 36648425 36650218 Vimu7g03911 7 36648425 36650218 ECH