Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03743 ATGTCTACTTATTTCAGTTTTGTGTATACTGCTTCTTCTGCCTGTGACTTTGATTATGATTCTCATATATATGCTGCTGATTTCTATGCTGAGAACAATATGGAGCCAATTCCACCTAATGAGGATAATGTTCATTGTGTTCTCAACACTGGACTGATACATTTGCTACCTAAGTTTCATGGTTTTAAAGGTGAATGCCCACATAAACATTTGGAGGGGTTCCATATCATTTTCTCTACAATGAAACCTCCACATGTCCCGGATGATTTTCTCGACCGTGACAAGCTCGACTTGAACTTGCTCACTCGATCTTCTGTCAACAAAATTGGCCAAATCATGTCACATTTAACAACCACTAATACGCGACCTTTCACCCAAGCAGATTCCTTTTGGCTTGAGGCTCTAAGTCACCACCTCGACGTGGCTAGAGCTTGGCTGCCGCACTATTGTCGAAGACTCGCCTTGCCGGCCGTCGCCGCACTGTTGAAGACTCTTCCACCATCGTACACTTCTCGCTGGAAAGAGAAGCAAATCTGCAACCAAAGAGGGCGAGGGCGGGAGGCCGTCGCCGAAGAGAGAGTAGTCGAGGAAGGACTGGACGCCGTGCACGGCGAGGGAGGGGGTGGAGAAGAGGTCGGGGTGGGGAGAAGTTGGCGGAGGAGTTGTGGTGATGGAGATGGTTTTGGCGGCGAGGAGGGTAGGGAGGCGGACGCGGCGGGGGAGGAGGAGGAGGTCGGAGAAGGGGGAGGCGCTGGGGGACGACGTGATAGGGGAGTAGGAAGGGGATCCAGCGGAGGACCGAGGACCGTCGAGGAAGACGTTGCGTGGGATGAAGAGTCTGGCTTTGAACTAAGTTCATTCAATTTGCCCACTCCTAATGCCACCCCTAATGCTATGCTATGCTCTCTAATCCGTTTGCGCCGTTACGCTTGTCCGCACTCTCCGCTTCTTCGTCTTCCTATTAGCCGTTTCTCCTCCGCCGGTGCCGCCATGGTTGCTCACACGAAGGACGACGCCTACCTTCAGGCGGCGATTCCGAAGCGCATCAAGCTGTTCGAGACTATTCAGGCGGAGCAGCGAACGCAGCGTCTCTCGCTCACGCCGGATCCTATCAAAGTTACTCTTCCCGACGGCGGCGTGAAGGAGGCGAAGAAATGGCTCTCGACTCCGCTCGACGTGGCCCGCGAAATCTCTAAGAATTTGGCCAACAATGCGCTCATCGCCAAAGTCAATGGCGTGCTCTGGGATATGACGCGCCCGCTTGAGGACGATTGCCAGCTCCAGATCTTCAAGTTCGATGACGACGAAGGACGCGACACGTTCTGGCACTCCAGCGCGCACATTCTCGGACAGTCTCTTGAGACGGAGTATGGATGCAAGCTCTGCATTGGGCCTTGCACTACAAGAGGAGAGGGATTCTATTATGATGCGTTTTACGGTGACTTGGGTCTAAATGACGATCACTTCAAGCAAATTGAAGCTGGCGCATTGAAGGCTGTTGCGGAAAAGCAACCCTTTGAGCGCATTGAAGTTACACGTGATCAGGCACTGGAGATGTTTTCTGATAATAAGTTTAAGATTGAGATTATCAATGATTTGCCTGCGGACAAAACTATCACGGTATACAGATGTGGTCCCCTTGTTGACTTGTGTCGTGGACCCCATATTCCTAATACATCATTTGTCAAAGCCATTGCATGTTTAAAGGCTTCGTCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATACTTGCATCGGCTGGAGGAGGCTAAAAAGTATGATCACCGGATTTTGGGTGTGAAGCAAGAGCTTATTCTTCATCATGAATGGAGTCCAGGAAGCTGGTTTTTTCTTCCACATGGTGCTCGTGTCTACAACAAACTCATGGACTTCATTAGAAATCAGTACAGAGACAGGGGTTATCAAGAGGTCATATCTCCAAATGTATTTAACATGGATCTGTGGGTGCAATCTGGTCATGCTGCAAATTATAGAGAGGATATGTTTATTTTAGAGATTGACAAACAAGAGTTTGGGTTGAAACCGATGAATTGCCCAGGACACTGTCTGATGTTTAAACACAGGGTTCGATCATATAGAGAACTTCCTCTCCGTTTTGCTGACTTTGGAGTTTTGCATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTAACACGTGTTCGGAGATTTCAACAGGATGATGCACATATTTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTGAGGAACGCATTGAGTTTCATCAATTATGTTTATAGCATATTTGGTTTCACATATGAGCTGAAGCTTTCAACGAGACCAGAGAAATACCTAGGAGATATTGCAACCTGGGATAAAGCTGAAAGTTCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGATGAAGTTTCTGTTAACAACCTCAAGATCCCCTTGTCCTTTTCTCTACTACAGGCCCATTCCTCCATTGAATGAAGGGGATGGGGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTAAGTAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCTGCTGAGGATGAAGCCAAAATTGAGAGACCTGTAATGATACATAGAGCAATTCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCTTTCTGGCTCAGTCCTCGTCAAGCAATTGTATGTCCTGTGTCTGAAAAATCACAATCTTATGCACTACAGGTGAAAGATCAGATCCACCAAGCAGGATTTCACGTTGATGCTGATACAACTGATAGAAAGATTCAAAAGAAGGTACGAGAAGCACAATTAGCTCAATACAACTACATCTTGGTTGTCGGAGAGGAGGAAGCAAATACTGGACAGGTGAGTGTGCGAGTTAGAGACAAGGGAGATCATAACGTTATGAGTATAGAGAACCTACTTAAACATTTCAGAGACGAAGCTGCAGCTTACCATTGA 3084 0.4705 MSTYFSFVYTASSACDFDYDSHIYAADFYAENNMEPIPPNEDNVHCVLNTGLIHLLPKFHGFKGECPHKHLEGFHIIFSTMKPPHVPDDFLDRDKLDLNLLTRSSVNKIGQIMSHLTTTNTRPFTQADSFWLEALSHHLDVARAWLPHYCRRLALPAVAALLKTLPPSYTSRWKEKQICNQRGRGREAVAEERVVEEGLDAVHGEGGGGEEVGVGRSWRRSCGDGDGFGGEEGREADAAGEEEEVGEGGGAGGRRDRGVGRGSSGGPRTVEEDVAWDEESGFELSSFNLPTPNATPNAMLCSLIRLRRYACPHSPLLRLPISRFSSAGAAMVAHTKDDAYLQAAIPKRIKLFETIQAEQRTQRLSLTPDPIKVTLPDGGVKEAKKWLSTPLDVAREISKNLANNALIAKVNGVLWDMTRPLEDDCQLQIFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALEMFSDNKFKIEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARVYNKLMDFIRNQYRDRGYQEVISPNVFNMDLWVQSGHAANYREDMFILEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNALSFINYVYSIFGFTYELKLSTRPEKYLGDIATWDKAESSLKEALDDFGKPWQMKFLLTTSRSPCPFLYYRPIPPLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVKDQIHQAGFHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKGDHNVMSIENLLKHFRDEAAAYH 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03743 1027 Gene3D Bira Bifunctional Protein; Domain 2 594 923 IPR045864 -
Vimu7g03743 1027 SUPERFAMILY Class II aaRS and biotin synthetases 588 938 IPR045864 -
Vimu7g03743 1027 CDD TGS_ThrRS 371 436 - -
Vimu7g03743 1027 Pfam TGS domain 371 431 IPR004095 -
Vimu7g03743 1027 Gene3D - 924 1027 IPR036621 -
Vimu7g03743 1027 Pfam Anticodon binding domain 932 1021 IPR004154 -
Vimu7g03743 1027 SUPERFAMILY TGS-like 371 431 IPR012676 -
Vimu7g03743 1027 SUPERFAMILY ThrRS/AlaRS common domain 433 610 IPR018163 GO:0000166
Vimu7g03743 1027 PANTHER THREONINE-TRNA LIGASE 338 1025 - -
Vimu7g03743 1027 MobiDBLite consensus disorder prediction 221 270 - -
Vimu7g03743 1027 Gene3D - 369 430 IPR012675 -
Vimu7g03743 1027 SUPERFAMILY Class II aaRS ABD-related 918 1023 - -
Vimu7g03743 1027 PRINTS Threonyl-tRNA synthetase signature 898 911 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vimu7g03743 1027 PRINTS Threonyl-tRNA synthetase signature 698 726 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vimu7g03743 1027 PRINTS Threonyl-tRNA synthetase signature 731 754 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vimu7g03743 1027 PRINTS Threonyl-tRNA synthetase signature 925 937 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vimu7g03743 1027 SMART tRNA_SAD_4 539 588 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vimu7g03743 1027 FunFam Threonine--tRNA ligase mitochondrial 1 924 1027 - -
Vimu7g03743 1027 FunFam Threonyl-tRNA synthetase, mitochondrial 602 825 - -
Vimu7g03743 1027 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 539 588 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vimu7g03743 1027 FunFam Threonyl-tRNA synthetase, mitochondrial 435 592 - -
Vimu7g03743 1027 CDD ThrRS_core 612 930 IPR033728 -
Vimu7g03743 1027 ProSiteProfiles TGS domain profile. 369 431 IPR004095 -
Vimu7g03743 1027 Gene3D - 434 592 - -
Vimu7g03743 1027 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 692 920 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu7g03743 1027 Hamap Threonine--tRNA ligase [thrS]. 436 1025 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vimu7g03743 1027 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 637 925 IPR006195 -
Vimu7g03743 1027 FunFam Threonine--tRNA ligase, cytoplasmic 369 430 - -
Vimu7g03743 1027 CDD ThrRS_anticodon 930 1020 IPR047246 -
Vimu7g03743 1027 NCBIfam threonine--tRNA ligase 442 822 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03743 Vimu-Chr7 32871776 32886333 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03743 K01868 - gmx:100812652 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03743 7 32871776 32886333 Vimu7g03743 7 32871776 32886333 ECH