Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03708 ATGCAGTACATATTAAACCAGAAAATTGGTAAAGTTTTATGTTCTGACCTTCTTCTGGTGGCAGATTCTATCAAAGGTGCACGTGCATCTCAGCAGCTGAATCATTCTTCTCAGTTGATAAAAGAAAAACTTCACTGGAGCAAGATGTACAAACAGTCTAATGAAGAACAGGGTGTAAGTAATAACAGGAAGGTTGGAAACTGTGATGCTGCAGAGAGCAGTTTTCAAAGCATGAGTGTTGATGATGTGGATCCATCTGGGGGTTCATCATTCCAATTAAGAAATTTGAGTTGCTGCTCATTGGTTTGTAAACCAAGTGCTACTAAGACAGCCAACAGATACTTCATGCTTCGTAAAGTAACTCAGTCCTGGCCCTCCCCAGCCTTGTGTTTTGTGGAGAGAGTGCCTCAAGATGCACAAAGTTCTCATGTTACAGTTTTTAATTCAGGTGACGGATCCTCAAAATCAGATAATGAGTCAACCTCATCTAAGGGCATGCGGGATGTTCATATTTCAATGCGGTTGATGGAGGACTTTCTAGATCTTGCTAAAGAAAACACAGAAAAGGATTTGGAAACTTGTGGTATACTTGGTGCCTATCTTGAGAAGGGAACCCTCTATATGACTACTCTGATTATACCAAAGCAGGAATCTGCTTCCAATTCTGTTAGTATCTGGTGTCAAGCTACAAATGAGGAGGAAGTTTTCAAAATTCTAAATGAAAGATCCCTTTATCCTGTAGGATGGATTCATACACATCCTTCTCAAAGTTGTTTCATGTCATCTGTGGATCTTCACACTCAATATTCCTACCAGATGATGATTCCTGAGGCATTTGCAATTGTCTTGGCACCAAATGATAAATTAAGGAGCTGTGGATTATTTCGTATAGCCGACCCGGAAGGAATGGATATTCTGAAAAATTGCCAGGAGACAGGATTTCATCCACACAAAGAACCAGATAATGGCAACCCTGTGTATGAGCACTGCTCCAATGTGTACAGAAACTCTAATCTAAGGTTTGAAATCTTTGATTTGCGATTAAATTGA 1050 0.399 MQYILNQKIGKVLCSDLLLVADSIKGARASQQLNHSSQLIKEKLHWSKMYKQSNEEQGVSNNRKVGNCDAAESSFQSMSVDDVDPSGGSSFQLRNLSCCSLVCKPSATKTANRYFMLRKVTQSWPSPALCFVERVPQDAQSSHVTVFNSGDGSSKSDNESTSSKGMRDVHISMRLMEDFLDLAKENTEKDLETCGILGAYLEKGTLYMTTLIIPKQESASNSVSIWCQATNEEEVFKILNERSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQMMIPEAFAIVLAPNDKLRSCGLFRIADPEGMDILKNCQETGFHPHKEPDNGNPVYEHCSNVYRNSNLRFEIFDLRLN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03708 349 SMART pad1_6 168 300 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu7g03708 349 Gene3D Cytidine Deaminase, domain 2 145 348 - -
Vimu7g03708 349 MobiDBLite consensus disorder prediction 144 164 - -
Vimu7g03708 349 FunFam AMSH-like ubiquitin thioesterase 2 149 348 - -
Vimu7g03708 349 CDD MPN_AMSH_like 167 347 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vimu7g03708 349 MobiDBLite consensus disorder prediction 144 160 - -
Vimu7g03708 349 SUPERFAMILY JAB1/MPN domain 169 302 - -
Vimu7g03708 349 PANTHER AMSH-LIKE PROTEASE 46 347 - -
Vimu7g03708 349 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 166 277 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu7g03708 349 ProSiteProfiles MPN domain profile. 169 303 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03708 Vimu-Chr7 32391096 32396278 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03708 K11866 - gmx:100807282 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03708 7 32391096 32396278 Vimu7g03708 7 32391096 32396278 ECH