Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03516 ATGTGTTTCTCACTCGCTTCACCCGCTAGGTCCGCAGAGGGGCCAATGGAGGTTTCTCCCGCTACTAATTTCGTTTCCGAAACTCTGTGTCCCTCTGAATCGGTCGGCGATTGTTGCGATCATTCTGGTCGGTTATCGGCCGTCGGCGAATCTACTCTTCCGGTGAGTTACGGTGTTTGCGGCGAGGACTCTGCGCAAGAGAATTGTAATACGGACACGCAGTTCCGGCAGCTCAACAACGATTCGACTCTGCTGTTGACTTCTTGTTCACCCGTCTCGGCGGTGGCGCCGGAATCGTGGGTTACTACCCAAGGGAACTGGCTCTTAGATGAGAACGAGGGTTCAATGGGTGCAGAATCTGTCTATGCAATTGGGCCTTCTAACATGGTTGTGGTCGTCGGAGCAGGACTTTCGAATCTCGGCAATACGTGTTTTCTCAATGCTATACTGCAATGCTTTACACATACAGTGCCTCTAGTGCAGGGTATTCGTGCGTGTACTCATAATTTCCCTTGCGCTGGTCATATGGATCGCTTCTGTGTTATATGCACTTTTCGTGACCAGGTTGAACGTTCTTTGTCCGCATGTGGACGAACTCTCTCACCTTTGAGATTCTCTAATGTGGATCTGTGCCCACTCACTTGGCTGGAAGAATTAAGGATTGTCACTAGTAGTAAATTTTGCATGATTAGCTTAAGATATCAGCAGGAGGATGCCCATGAATTCATGCAGTGTGCTTTAGATAAACTGGAAAGGTGTTTCCTAGATTTGAAGAAGACTGATTTAAATTTTGAAGATGATAATCTTGTACAGAAAGTATTTGGTGGTCGTCTCATTAGCAAACTTCAATGTTGTAGCTGTGGTTGCACTTCTGACACTTATGAGCCGTTAATTGACATGAGTTTAGAGATAGAAAGCGTGGATTCTCTTCCAAGTGCTCTGGAATCTTTTACTAAGGTGGAAAAGATTGACGCAAACTTTAGATGTGATAGCTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATATGGCACCATCAATTGCAGCATTTCATTTAAAAAGATTTAAGACAGATGGGATTCTTGTTGAGAAGATTGATAAGCATATTGATTTCCCATTGGAGTTAGACTTGCAGCCTTACACCATTTCTGATCAAAACAATGATGTGAGTTGTGGTTTTATCGCCGAACTTACATTTTCTAGATCTTTGCACGTACTGATGAAATATGATTTATATGCCATTGTTGTGCATACTGGATTTTCTTCTACTTCAGGGCATTACTTCTGCTTTATTCGCTCTGGTCCAGACACATGGCACAAGTTGGATGATTCAATGGTTACTGAGGTATCAGGAGACTCTGTACTGTCTCAGGAAGCATACATACTGTTTTATGCAAGACAGGGTACTCCATGGTTCTCTAGTATCATGGAATCTCAAAAGCAATGTTTGGATCCAAATATTTCAAGTACATCTCCTACGTCTGTTTTAGACGTTGGTGATGACATGTCTAAATCTAATCCCAGTTTAGTTCCAAGTACCGAAGAAGGTGGGGCTGGTGCATCCAAAGGATGTTCTGATCCTCCGTTTGATTATTTTTGTCCAGACCAACTTGCTATTTCTGAAACAAATGACACTAAAGATGTTACTCATGGCTGTGGACGATTTCTCTACGGGTCAAATCAGGAGAGCATTTCTTTCCATGGCAGCTCTAAAGATGTTGAAACCCAAAAGTTCAGGAACAGGGTGACCTTGGATGCTCGTTCCATGATTAATGGAAAATCCTTTACTGAGAATGTTAGTGTTGATAATAACCATGATTGTGAGGAAGTTGTTGATTTTAGAGAGAGTGCTGGTGCTTCTTCACCATCTTCGCCTCCGCCCACCTCCCCTCTTGATGATGCTTCAGGTAATAAATTTCATATCCCACGTGATAAACCGAAGGAGAGTAAGCAGAGCCGTAGAAGACCACTCTATCAGTGTAACGAGGATATTCGTAGACGAGAAGCTATGAAATATCTGAACAAGACTGGTTCAAGGAGAGCGGAACTTATGAAATATGTTCCAGATGGAGCTTCAAACAAGAGAAAAAAAGTGGATTCATTGCAGTGTAAGAAAACCACCTCTCTTGATCGCAAAAAATCAAACCAAACATCTGTCAGCCGCCCTGTGGCAGCTGGAATTTCACAGTGA 2199 0.432 MCFSLASPARSAEGPMEVSPATNFVSETLCPSESVGDCCDHSGRLSAVGESTLPVSYGVCGEDSAQENCNTDTQFRQLNNDSTLLLTSCSPVSAVAPESWVTTQGNWLLDENEGSMGAESVYAIGPSNMVVVVGAGLSNLGNTCFLNAILQCFTHTVPLVQGIRACTHNFPCAGHMDRFCVICTFRDQVERSLSACGRTLSPLRFSNVDLCPLTWLEELRIVTSSKFCMISLRYQQEDAHEFMQCALDKLERCFLDLKKTDLNFEDDNLVQKVFGGRLISKLQCCSCGCTSDTYEPLIDMSLEIESVDSLPSALESFTKVEKIDANFRCDSCKEEVSMEKQLMLDMAPSIAAFHLKRFKTDGILVEKIDKHIDFPLELDLQPYTISDQNNDVSCGFIAELTFSRSLHVLMKYDLYAIVVHTGFSSTSGHYFCFIRSGPDTWHKLDDSMVTEVSGDSVLSQEAYILFYARQGTPWFSSIMESQKQCLDPNISSTSPTSVLDVGDDMSKSNPSLVPSTEEGGAGASKGCSDPPFDYFCPDQLAISETNDTKDVTHGCGRFLYGSNQESISFHGSSKDVETQKFRNRVTLDARSMINGKSFTENVSVDNNHDCEEVVDFRESAGASSPSSPPPTSPLDDASGNKFHIPRDKPKESKQSRRRPLYQCNEDIRRREAMKYLNKTGSRRAELMKYVPDGASNKRKKVDSLQCKKTTSLDRKKSNQTSVSRPVAAGISQ 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03516 732 SUPERFAMILY Cysteine proteinases 135 469 IPR038765 -
Vimu7g03516 732 MobiDBLite consensus disorder prediction 616 662 - -
Vimu7g03516 732 Pfam Ubiquitin carboxyl-terminal hydrolase 136 467 IPR001394 GO:0004843|GO:0016579
Vimu7g03516 732 FunFam Ubiquitin carboxyl-terminal hydrolase 20 131 473 - -
Vimu7g03516 732 MobiDBLite consensus disorder prediction 715 732 - -
Vimu7g03516 732 MobiDBLite consensus disorder prediction 640 662 - -
Vimu7g03516 732 MobiDBLite consensus disorder prediction 692 714 - -
Vimu7g03516 732 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 135 470 IPR028889 -
Vimu7g03516 732 Gene3D Cysteine proteinases 134 472 - -
Vimu7g03516 732 MobiDBLite consensus disorder prediction 497 525 - -
Vimu7g03516 732 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 136 151 IPR018200 GO:0004843|GO:0006511
Vimu7g03516 732 MobiDBLite consensus disorder prediction 497 515 - -
Vimu7g03516 732 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 412 430 IPR018200 GO:0004843|GO:0006511
Vimu7g03516 732 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 81 470 - -
Vimu7g03516 732 MobiDBLite consensus disorder prediction 687 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03516 Vimu-Chr7 29857819 29861311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03516 136 469 Miscellaneous Gene Families AT2G24640 32.464 8.55e-47 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03516 K11855 - gmx:100808015 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03516 7 29857819 29861311 Vimu7g03516 7 29857819 29861311 ECH