Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03501 ATGGGCAAGAAGAAACCCAAGGACCCGCAACAAACCCTTCAAACCGATACCGTTTCATCTCCTTCCAGCATTTTCAACAAGCTCTTCGGCAACGCGCCGGAACATGGCACTGCAACCGCTGCCTCTCTATTTTCCGACGACAACCCCTTTCGGAGAAAACCTGCTCCACTTTCCGACACAACGAACCAAGCTTACATCCCTAACAACGGCAACGCCCAGAACCGCGATGCCGGCGACGAGAAGAAGCGCAAGAAGAACAAAGAGAAAAGCCCAGCCCTTGATCCAGTTTCTGTAACCGAAGTTTTGGAGAAATCGGAGAAGAGGAAACGCGGTTCCGATGAAGGAAGAGAAGGAGGCCTTGATTTGGGTGCAGAAGCAGTTGGGAAAAGAAAGAGGAAAAGGGACGAAGTTGAAAGAGAGTGGGAGGAGAAGAGATATGGGCTCATGGAGGAAGTTCCAAAGGAAGGGACTGAGAATAAAACTGTTGGGAACAAGAGGAAGACGTTGGATGATCCAGCTGATACGATGGTTGCAAAGGAAGGTTTTGATGACGAGAATAAACTTTTGAGGACTGTCTTTGTGGGGAATTTGCCTCTCAAGGTGAAAAAGAAGATTCTGTTGAAGGAGTTTAAAAAGTTTGGTGAGGTCGAGTCTGTGAGGATTCGTTCTGTTCCGATACAAGATACTAAGAAACCTAGAAAGGGAGCCATCCTTGCGAAGAAAATAAATGATGCCGCTGATAGTGTACATGCATACATTGTTTTCAAAACCGAGCAATCGGCACAGGCTTCTTTGTCTCACAACATGTCACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAAAGTGTTCCTCTTTATGACAACAAGAGAACTGTTTTTGTGGGTAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGCATATCCAACCTGGAATCAAGTGTAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGCAATGCAGGGAGGTCTCTGTCCTCTTTCCCATCTCAGATACCTGTTTCCTTCTTTTTTTTCCTGCTGAGTGGCCGGGTAGTCACCTGTTCTATTTTCTTAAGGAAGCTGCTAAATTTGTTGTTAAGAAAAGGAACTTGAAGCTTCGAGACCGAGAGTTGAGACTCTCTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGTCAAACCCATCCTCAACACAAGCTCCTACCCCTTCTAAAAGGCCAAACACATCATCAACACAAGCTCCTGGTACTCCTTCAAAGAAATTTTCTGTGGCTTCACGGTCTCCTTCGAGCAGTGTTAACAGGTCAAACAGAAAAGCCAATACATCTTATCAGGGTTTACGTGCAACCAAATCAGATGTGCACAAGAAAACCCAACAAGGTGGAGAAAAGCCAAAACAACGCCAGACAAAGAGACCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAATTTGCACAAGGAGAGTGGTGCACCAAAACAAGCAGGGATAAAACGCAAGCTTGATAGTCGTACTCCAGACAACACCCTGCGTAATAAGAAAGTAAAAAAGAACAGGTAG 1650 0.4515 MGKKKPKDPQQTLQTDTVSSPSSIFNKLFGNAPEHGTATAASLFSDDNPFRRKPAPLSDTTNQAYIPNNGNAQNRDAGDEKKRKKNKEKSPALDPVSVTEVLEKSEKRKRGSDEGREGGLDLGAEAVGKRKRKRDEVEREWEEKRYGLMEEVPKEGTENKTVGNKRKTLDDPADTMVAKEGFDDENKLLRTVFVGNLPLKVKKKILLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESVPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAVRVVRDPHLNVGKGIAYVLFKTKQCREVSVLFPISDTCFLLFFPAEWPGSHLFYFLKEAAKFVVKKRNLKLRDRELRLSHAKADATPSKRSNPSSTQAPTPSKRPNTSSTQAPGTPSKKFSVASRSPSSSVNRSNRKANTSYQGLRATKSDVHKKTQQGGEKPKQRQTKRPSVAARKAKANLHKESGAPKQAGIKRKLDSRTPDNTLRNKKVKKNR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03501 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 416 IPR000504 GO:0003723
Vimu7g03501 549 MobiDBLite consensus disorder prediction 100 140 - -
Vimu7g03501 549 Gene3D - 186 290 IPR012677 -
Vimu7g03501 549 MobiDBLite consensus disorder prediction 150 169 - -
Vimu7g03501 549 Gene3D - 296 423 IPR012677 -
Vimu7g03501 549 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 281 465 - -
Vimu7g03501 549 SMART rrm1_1 302 375 IPR000504 GO:0003723
Vimu7g03501 549 SMART rrm1_1 191 280 IPR000504 GO:0003723
Vimu7g03501 549 MobiDBLite consensus disorder prediction 1 140 - -
Vimu7g03501 549 MobiDBLite consensus disorder prediction 481 501 - -
Vimu7g03501 549 MobiDBLite consensus disorder prediction 418 480 - -
Vimu7g03501 549 SUPERFAMILY RNA-binding domain, RBD 190 359 IPR035979 GO:0003676
Vimu7g03501 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 234 IPR000504 GO:0003723
Vimu7g03501 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 356 IPR000504 GO:0003723
Vimu7g03501 549 MobiDBLite consensus disorder prediction 411 549 - -
Vimu7g03501 549 MobiDBLite consensus disorder prediction 75 91 - -
Vimu7g03501 549 MobiDBLite consensus disorder prediction 11 27 - -
Vimu7g03501 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 284 IPR000504 GO:0003723
Vimu7g03501 549 MobiDBLite consensus disorder prediction 55 74 - -
Vimu7g03501 549 CDD RRM1_RBM34 190 280 - -
Vimu7g03501 549 MobiDBLite consensus disorder prediction 511 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03501 Vimu-Chr7 29671024 29675334 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03501 K14837 - gmx:100784494 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03501 7 29671024 29675334 Vimu7g03501 7 29671024 29675334 ECH