Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03476 ATGGAAGCAAAAATCGCAAAGGCATTGGATAGGGTTGCACCCAATCTGAAGCGCAAGCGAGCGACCCGATATGCTGCACTTTTTAGTGGAGCTTCACAATCAATTTTGGGCCATTGGCCATCGTGTGTGTCACCAACGAGCAGGGTTGCCAAACGGATGAGATTTGGTGGATGTAGAAACAAGTTGACAAATGCTGGTCCTCATATTGGGCAGTCCTTAGTTAGACGTTTTTCAAATTATAAAAAGAGTGGGAGACTGGAGCGTTTGATGTTCTATAGGAATGGTGAATGGCTTGACCTTCCTAAGGATGTTGTTGACTTGGTTAAGAAGGATCTTGAAGTCAAGAAGGTAGCTGTGGAGATAGAGTTAAATGGGTATCATCTTGTATTTGATTTTTTACATCTGCACAAGGTGGACTTGAAAACTGGCTTGCAACAACCTATAGCTTGGATTGATGATGCAGGTCACTGCTTTTTTCCAGAAGTCTATACTTACTCTGACGAGGAACCTTACAATACCAATGAACAGGAAAATGGAAAAAGTCCCGACTCATATGCGTCTAACGAAATAAAACTACATTTAGAAGTTGAGATCAATGGAGTGGATCAATCCAGATTGAGTGAGTGTAGTGGGGAGTCCAATGCTCTAGTTAAGGGTATTCAAATTGATACTAAACAAAATTATTGTCAATATGATGTAGAAGTTGAAGATAGCATTAACAAACAGGACTGCAGAAATGTTGGTGAAGCTATTCAGCGCAATCAAGACATAGGTTTAGGTGCTTATACTGAATCAATATATGGAAATTTGGATTTAAATTCTGTACAAAAGATGTTTCTCAAGGGAATGAGTAGTTTTGGCAGTTCTGATTCCGACATACTTGAGATTTACCACTGCTCAGGTGCGGCAATGCAAGCTCGATGGGAGCTTTTCCAGAAGCAAGCTGAAATTACAAAAACAATTCATGGGGAAGCAAACATTCGGTATGCTTGGCTTGCTTTTTCTAAAAGAGATCTGTCTACAATGATGGAGTATGGACTTGGTCATTGTGGACTATCTGGACCAAAGTGCACATATGGCATTGGTGTTCATCTTGCTGCTGCTTCCTGCCCTGATGCCAGTGTACGTTATTGTGATGTTGACGAAAATGGGGTTCGACACTTGGCCCTCTGTCGTGTAATAATGGGGAACATGGAGATTCTCTGTCCTGGCAGTGGTCAGTTTCAACCCAGTAGTTGTGAATATGATAGTGGGGTGGATGATATTCAGTGTCCGCGATACTATGTTGTGTGGAATATGAACATGAACACCCATATCTATCCCGAATTTCTTATTAGCTTCAAGGTCCCTTCTGATGCTGAAGGTCATTTTTGTGGACATAAGGTTAATACAGCCTCTTGCAGTCCTCTTGGCCTCTCGGAGACATCAGCAATAGATAATGGAAAAGCTCATAGTGTAGTTGCTAGCACTCCAAAAGTCCCGAAATCCCCTTGGATGCCTCTACCTGTGCTTTTTGCTGCTATCAGAAATCAGGTTCCGTCCAAGGATATGAATCATATCAAAACACATTATGAACAATTCAGGTCAAAGCAGATATCCCGGGATGATTTTGTGAAGATGCTGAGGTTAATAGTTGGAGACGCTCTGTTGAGAGCTACAATAAATGATCTTCAATACAAGATACCTTCTAATGGGGGATTAGATGACTCAATCAAGAAGGAAGGTTAA 1728 0.4144 MEAKIAKALDRVAPNLKRKRATRYAALFSGASQSILGHWPSCVSPTSRVAKRMRFGGCRNKLTNAGPHIGQSLVRRFSNYKKSGRLERLMFYRNGEWLDLPKDVVDLVKKDLEVKKVAVEIELNGYHLVFDFLHLHKVDLKTGLQQPIAWIDDAGHCFFPEVYTYSDEEPYNTNEQENGKSPDSYASNEIKLHLEVEINGVDQSRLSECSGESNALVKGIQIDTKQNYCQYDVEVEDSINKQDCRNVGEAIQRNQDIGLGAYTESIYGNLDLNSVQKMFLKGMSSFGSSDSDILEIYHCSGAAMQARWELFQKQAEITKTIHGEANIRYAWLAFSKRDLSTMMEYGLGHCGLSGPKCTYGIGVHLAAASCPDASVRYCDVDENGVRHLALCRVIMGNMEILCPGSGQFQPSSCEYDSGVDDIQCPRYYVVWNMNMNTHIYPEFLISFKVPSDAEGHFCGHKVNTASCSPLGLSETSAIDNGKAHSVVASTPKVPKSPWMPLPVLFAAIRNQVPSKDMNHIKTHYEQFRSKQISRDDFVKMLRLIVGDALLRATINDLQYKIPSNGGLDDSIKKEG 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03476 575 ProSiteProfiles PARP catalytic domain profile. 249 469 IPR012317 GO:0003950
Vimu7g03476 575 SUPERFAMILY ADP-ribosylation 272 450 - -
Vimu7g03476 575 Pfam RCD1-SRO-TAF4 (RST) plant domain 494 558 IPR022003 -
Vimu7g03476 575 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 67 560 IPR044964 -
Vimu7g03476 575 ProSiteProfiles RST domain profile. 492 563 IPR022003 -
Vimu7g03476 575 Gene3D - 268 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03476 Vimu-Chr7 29419920 29423477 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03476 - - gmx:100800707 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03476 7 29419920 29423477 Vimu7g03476 7 29419920 29423477 ECH