Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03456 ATGGCTTCTAAATTCAAGCATGGATCCTCCATGGTTCGGAATATCACGCAGCTGAGCAATGATTTGGATCAGGAGGGTGAAAATGGGAGTGTTGGCCTTGCTACCTACACGGTTCACATTCCTCCAACGCCTGATAACCAGCCTATGGAGATTTCTCTGGAGAGGTCGAGTTCTCGGAGAGCGGAGGATCAATACGCTTCTAGTTCTTTGTTCACCGGCGGTTTTAACCAGGTCACACGTGCCCATTTGAAGGACAAGGTGATTGAGTCCGAATCCAGCCACCCCCAGATGGCTGGTGCAAAAGGGTCCGCTTGTGAAGTGCCTGGGTGTGATGGAAAGGTCATGACTGACGAAAGAGGGTTGGATGTAGTCCCTTGTGAGTGCGGTTACAAGATTTGTAGGGATTGTTACAGAGATGCTTTGAGGGCTGGTGAGGGTATCTGCCCTGGTTGCAAGGAGCCTTACAATGAGCCTGAGGTGAAATCACAGACACTGTCTTTGCCTCCTGGTGCTGGGGTTAATAAGATGGAGAGGAGGTTGTCGTTGATGAAATCAGGGACGTTGACGAGGAGCCAGACTAATGAGTTTGACCATGCTCAGTGGTTGTTTGAAAGCAAGGGGAGTTATGGATATGGGAATGCTATGTGGCCTAAAGAGTCTGAACCTGATGCCGATTCTGCTTCGGATTGGATGGGGGGTGATCCTAATGTATTCAATGAAAAGCAGTGGAAGCCCTTGACCCGGAAGTTGAGTATATCTGCTGCAATTCTCAGTCCTTATCGGCTCATGATATTTATTCGGCTAGTGATTCTAGTTTTCTTTCTAAAGTGGAGGGTCCAAAACCCCAATGATGATGCAATCTGGCTGTGGGGCATGTCAGTGGTATGTGAAATCTGGTTTGCCTTCTCCTGGGTGCTTGACCAGTTTCCTAAGCTCTTCCCCGTAAATCGTGTTGCCGATCTTGATGTTTTGAAAGAGAAGTTTGAAACTCCTAATCCCGCCAATCCCACTGGGAAGTCTGATCTTCCGGGAATAGACATGTTTGTATCAACTGCTGATCCAGAAAAAGAACCACCACTTGTTACTGCCAATACCATTCTTTCCATTCTAGCTGCCGATTATCCTGTTGAGAAACTCTCATGCTATGTCTCTGATGATGGTGGTGCGCTCCTAACTTTTGAGGCCATGGCAGAGGCTGCAAGTTTTGCCAACTTGTGGGTTCCTTTTTGCCGGAAGCATGACATTGAACCCAGGAACCCAGAATCTTATTTTAATCTCAAGAGAGACCCTTACAAGAACAAAGTACGCTCTGACTTTGTGAGGGACCGCAGACGAGTAAAGCGTGAGTATGATGAGTTCAAGGTTCGGATTAATGGCCTTCCTGATTCAATCAGGCGGCGCTCTGATGCTTATAATGCTAGTCAAGAAATGAAAGCCATGAGGAAACGGAGAGAGAATGGAAATGAAGAACCGATGGAGAATTTGAAAATTCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCGGGGACTTGGACAAATGCTGCACCAGAGCATTCCAGGGGTGATCATGCCAGTATCATACAGGTAATGTTAAAACCCCCAAGTGATGAACCACTGACTGGCACAGCATCAGATTCAAATGCCTTGGATTTAACTGAAGTTGATATTCGTCTTCCTATGCTTGTCTATGTTTCTCGTGAAAAACGACCCGGCTATGATCACAACAAAAAGGCCGGGGCCATGAATGCCTTAGTTCGAGCCTCAGCCGTAATGTCCAATGGCCCTTTCATTCTCAATCTTGATTGTGACCATTACATATATAATTCTCAGGCCTTGAGAGAAGGAATGTGCTTCATGATGGACCGTGGTGGAGACAGGCTCTGCTATGTCCAATTTCCTCAAAGGTTTGAAGGGATAGACCCCAATGATCGCTATGCCAATCACAACACTGTCTTCTTTGATGTCAATATGCGTGCTCTTGATGGAATTCAGGGTCCCGTATATGTTGGCACAGGGTGCCTATTTCGAAGAACTGCTCTCTATGGCTTTGATCCACCCCGGATCAAGGAAGAGACTGGTTGGTTTGGTAGAAAGAATAAGAAATCCTCAACAGTGGCATCTGTCTCTGAAGCTGGTGCTGAGGAACAGTCATTGAGGAATAATGACATTGAGGATGAAGAAATGGTCACTGCTCTTGTTCCCAAGAAATTTGGCAACTCCAGTCTTCTTGTTGATTCAATCAGGGTGGCTGAGTTCCAAGGGCTGCCCCTTGCTGATCATTCATCCATCAAATATGGTCGTCCACCTGGTGCTCTAACACTCCCTCGGGATCCTCTTGATGCTGCTACTGTTGCTGAGGCCATCAATGTGATCTCATGCTGGTATGAGGACAAGACTGAATGGGGCATTAGAATTGGATGGATTTACGGGTCAGTTACTGAAGATGTTGTGACAGGTTATAGAATGCACAATAGAGGATGGAGATCTATATATTGTGTGACAAAAAGAGATGCATTCCGTGGCACTGCCCCAATCAATCTCACAGACAGGCTTCACCAGGTTCTTCGGTGGGCAACAGGCTCAGTTGAGATCTTCTTTTCACGCAACAATGCTCTTTTGGCAAGCTCTAGATTGAAATTTCTGCAGCGGATTGCTTACCTCAATGTTGGAATATACCCTTTCACTTCCATCTTCCTTATTGTGTATTGCTTCCTTCCCGCTCTTTCACTTTTCACTAACCAGTTCATTGTTCAAAGCCTTGATGTAAACTTCCTAGTTTATCTCTTGGGGATAACCTTGACCCTTGTCATCCTTGCTGTTTTGGAAATCAAGTGGTCTGGCATTGCGCTCGAAGAGTGGTGGAGGAATGAACAGTTCTGGTTGATTGGAGGCACCAGTGCTCATCTTGCCGCTGTGCTTCAGGGTCTGCTGAAGGTGATGGCTGGCATTGAAATTTCATTCACTTTGACATCAAAGTCTGCCGGTGATGACGAAAATGACGAATACGCTGATCTCTATGTCCTCAAGTGGACATCTCTTATGATACCACCAATCACAATCATGATGGTTAATTTGATAGCCATTGCAGTTGCAGTTAGCAGAACAATATACAGTGAGGATCGTGAATGGAGCAGTCTGCTTGGAGGTGTGTTTTTCAGCTTTTGGGTTTTGGCTCATTTGTATCCCTTTGCAAAAGGGCTAATGGGTAGAAGGGGTAGGACACCCACCATTGTGTTTGTATGGTCTGGTCTGATATCAATAACCATATCACTCCTTTGGGTTGCTATTGATCCTCCCTCTGGTAGCACTCAAATTGGAGGGTCATTCCAATTCCCTTGA 3345 0.461 MASKFKHGSSMVRNITQLSNDLDQEGENGSVGLATYTVHIPPTPDNQPMEISLERSSSRRAEDQYASSSLFTGGFNQVTRAHLKDKVIESESSHPQMAGAKGSACEVPGCDGKVMTDERGLDVVPCECGYKICRDCYRDALRAGEGICPGCKEPYNEPEVKSQTLSLPPGAGVNKMERRLSLMKSGTLTRSQTNEFDHAQWLFESKGSYGYGNAMWPKESEPDADSASDWMGGDPNVFNEKQWKPLTRKLSISAAILSPYRLMIFIRLVILVFFLKWRVQNPNDDAIWLWGMSVVCEIWFAFSWVLDQFPKLFPVNRVADLDVLKEKFETPNPANPTGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANLWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVRDRRRVKREYDEFKVRINGLPDSIRRRSDAYNASQEMKAMRKRRENGNEEPMENLKIPKATWMADGTHWPGTWTNAAPEHSRGDHASIIQVMLKPPSDEPLTGTASDSNALDLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSQALREGMCFMMDRGGDRLCYVQFPQRFEGIDPNDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPRIKEETGWFGRKNKKSSTVASVSEAGAEEQSLRNNDIEDEEMVTALVPKKFGNSSLLVDSIRVAEFQGLPLADHSSIKYGRPPGALTLPRDPLDAATVAEAINVISCWYEDKTEWGIRIGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFTNQFIVQSLDVNFLVYLLGITLTLVILAVLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVMAGIEISFTLTSKSAGDDENDEYADLYVLKWTSLMIPPITIMMVNLIAIAVAVSRTIYSEDREWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLISITISLLWVAIDPPSGSTQIGGSFQFP 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03456 1114 SUPERFAMILY Nucleotide-diphospho-sugar transferases 360 699 IPR029044 -
Vimu7g03456 1114 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 544 699 IPR029044 -
Vimu7g03456 1114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 166 IPR013083 -
Vimu7g03456 1114 MobiDBLite consensus disorder prediction 469 493 - -
Vimu7g03456 1114 FunFam cellulose synthase-like protein D3 550 687 - -
Vimu7g03456 1114 Pfam RING/Ubox like zinc-binding domain 107 156 - -
Vimu7g03456 1114 MobiDBLite consensus disorder prediction 469 492 - -
Vimu7g03456 1114 FunFam Cellulose synthase-like protein D3 88 167 - -
Vimu7g03456 1114 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 243 1084 - -
Vimu7g03456 1114 MobiDBLite consensus disorder prediction 40 59 - -
Vimu7g03456 1114 Pfam Cellulose synthase 345 1104 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu7g03456 1114 SUPERFAMILY RING/U-box 95 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03456 Vimu-Chr7 29193364 29197362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03456 13 1114 Glycosyltransferase AT3G03050 75.492 0.0 1758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03456 K20924 - gmx:100813900 2037.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03456 7 29193364 29197362 Vimu7g03456 7 29193364 29197362 ECH