Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03420 ATGGCTGCTCTGCAATACTTGGAATCGCTGCGCAACGCGCACCCTGAGCTCGCCGAATGGTACAATTCGCTCGCGGATCTGTACCAGAAGAAGCTCTGGCATCAACTTACCCTCAAGCTTGAGCAGTTTGTCGCACTCGCTGTTTTTCAGGTTCCACTTTTCTTCTTGACTTCATTTTTTATTTCGCTATCTGCACTCGTAATTGATGGAAAGCTGAACTGTACCTCGGAGTTAGGGGTGATGTTGTCTGGAGAGAGTGATTGTGCTGCTGTTAGGGTTTTGTTTTGGGGGCTTGAATTGTTGTGTTTGGAACGGTGGGAAAGATGGGAACTTTTTTCACAGGGATTGCGTTTAGATTTCGTTAGATTCATTCGTTATGCTGGTGATGCGTTGATTCAATTATATCACAATTTCATCACAGACTTCGAGACTAAAATCAACCTTCTGAAGCTTGCACATTTTGCTGTTATAGTTTCTCGGCAGTATTCTGAAAAGGAAGCTGCTGTTGGTTATCTTGGAGGGGTCATCGAGAAGTTGCAGGCCACTAGAGAGCAGCGCATAGAAGAACCCATCCTTTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGACCAGAAGGAATGCAAGAAACTCCTGGAAGATGGGAAGACTACACTTGACAGCATGACAGATATTGATCCATCTGTATATGCTAACTATTACTGGGTATCATCTCAATACCACAAGACCCGCCAAGAATTTGCCGAGTTCTACAAAAGTGCCCTTCTCTATTTGGCATACACATCAGTGGAGTCACTATCAGAATCATTTAAGCTGGATTTAGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGACAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAATCAAGAGCCTTCTGGGGACAAAAGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATTTAGTGCGATATCAAGAATTGTGTCGGGTGCATAATGCTGCTTTAAGTGCCCAACCAGCACTGGTTCAAAATGAACAGAAGTTGTTGGAGAAGATCAACATTCTCTGTCTGATGGAGATTATATTCAGTCGGCCTTCAGAAGATCGAACTATTCCATTGAGTGTAATTGCTGAGCGTACAAAACTTTCTATAGAGAATGTGGAACATCTCCTAATGAAGAGCTTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCACGTTTCCTGGGTGCAACCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTTGACAGTTGGACAGGGAAAGTACACACTGCATTGTTATCCATCGAGGCAGAAACACCTGATCTAATCGGATCGTGA 1389 0.4327 MAALQYLESLRNAHPELAEWYNSLADLYQKKLWHQLTLKLEQFVALAVFQVPLFFLTSFFISLSALVIDGKLNCTSELGVMLSGESDCAAVRVLFWGLELLCLERWERWELFSQGLRLDFVRFIRYAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAVGYLGGVIEKLQATREQRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKTTLDSMTDIDPSVYANYYWVSSQYHKTRQEFAEFYKSALLYLAYTSVESLSESFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALSAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03420 462 Pfam PCI domain 314 419 IPR000717 -
Vimu7g03420 462 ProSiteProfiles PCI domain profile. 250 423 IPR000717 -
Vimu7g03420 462 SUPERFAMILY "Winged helix" DNA-binding domain 351 424 IPR036390 -
Vimu7g03420 462 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 126 460 IPR035298 -
Vimu7g03420 462 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 348 441 IPR000717 -
Vimu7g03420 462 Gene3D - 281 419 - -
Vimu7g03420 462 FunFam 26S proteasome non-ATPase regulatory subunit 13 homolog B 250 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03420 Vimu-Chr7 28839701 28844830 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03420 K03039 - gmx:100804455 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03420 7 28839701 28844830 Vimu7g03420 7 28839701 28844830 ECH