Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03330 ATGGGTAATCCACGGAGATCGAAGACGGCGGACGACCTTCATTCCGCGGCGAGGTCTGGGGATCTCATCGCCGTTCAGTCAATTTTGGCTTCAAATCCTTTGGCCGTTAATTCCAGAGATAAGCATTCCAGAACACCTCTACATTTAGCAGCATTTTCTGGGCAAGCAGAGGTAGTCACTTATCTCTGCAAGCACAAGGCTGATGCTGGTGCTTCTGCTATGGATGACATGGCTGCAATACACTTTGCTTCACAGAAGGGACATTTAGAAGTTGTTCGAGCTCTACTTTCAGCTGGGGCCTCTCTCAAAGCATCTACCCGCAAAGGCATGACTTCATTACACTATGCTGTTCAAGGTTCCCATCTGGAGCTCGTTAAGTATTTGGCCAAGAAAGGAGCAAACCTTGCTGCCCAGACAAAGGCAGGAAAGACCCCTTTGGATCTTGCTAACAATGGAGAAATCCGATCCTTTCTGGAGGAATTTGAGAAGTCAGCAAATAATGGAGAATTGGGAAAGAAAGATAAAGATAAAGCTGAAGAATTTGATCCCAAGACATCTGAATTGGGATCGGAAGGTGATTTGAATGCCGAGCCTCCTAATGCTGCTCTTGATGAAGAAAAAAATGCAAGAGAAAAGAGAAAGGGTAATGAAGACGACGCAAGAGTAGAGTCATCACAACCAAAAAAAGCGAGAGTTAAGTTAAGCCATCTCCAAAGTTCAGATGATACCCAAGAAGAAGAGAACATCAAGTTAAGGTATCTAAGAACACTGGGCATTTTCGTTGCGGGTTCAAAACCAGGGTGTGGGTTAGGAGAGTTGCATAGCTTAAAGTTGGGAGGCACGCTAAGAATCAAAGGCTTTGAAAACATCCCCAATGAAAGGGATGTTAAACAAGCAAATTTGATTGATAAAATGATCTTCAATCATCCTTTAACGCCACCAAGCACCTCATCTCTCATAATCTGTGCAAGAATTGACGCGGTCTCTAACCTTAAATTTCCATGTCTTCCTTCTGTTGAGGAACTTCCTGCTGGAAGCATTGACGAAATGACTTCCTTTACGGAAGGGGTTGTGAGGAATATGGTTTGTCTAAAGACCTTGAACATTCATGCGATAAAAGGAGTGAAGGTACTACCCGACCAAATCAGCAGGTTGGGTGCACTAGAGTTGCTTTTCATTCAAGATTGGTATGGTTTGGAGTATTTCTCAGAACACGCGCTGGATGGTCTAACTTGTCTTCGAACTTTGATCATTGGTAACTGTAAGCAATTAAAATCCTTGTCTGAAGGTGTGCGACATTTGACTTGTCTTGAGAGTTTGGAAATTAGCAATTGTCCAAAGCTGGTGGCTCTACCGAGCAATATGAGCCAACTGACTGTCCTTCGGAAAGTGTCAATCAGGCTTTGCTCCTCATTACCATATGGCTTACAGCGCGTTCCCTTCCTACGTATTTTGGGTATACACCATTGCAAGTACATGGCTAATCTTCAAGAACTAAGCATTATGTTCTGTGAGGAGTTGAGGTCACTGCCAAGTAGCATTCAACGCCTCACCGACTTGTCTAAATTAAGAATAGAAGAATGTCCTCATCTGGAAGCGATGCAAGAGGGAAACAGGGAATGA 1623 0.4375 MGNPRRSKTADDLHSAARSGDLIAVQSILASNPLAVNSRDKHSRTPLHLAAFSGQAEVVTYLCKHKADAGASAMDDMAAIHFASQKGHLEVVRALLSAGASLKASTRKGMTSLHYAVQGSHLELVKYLAKKGANLAAQTKAGKTPLDLANNGEIRSFLEEFEKSANNGELGKKDKDKAEEFDPKTSELGSEGDLNAEPPNAALDEEKNAREKRKGNEDDARVESSQPKKARVKLSHLQSSDDTQEEENIKLRYLRTLGIFVAGSKPGCGLGELHSLKLGGTLRIKGFENIPNERDVKQANLIDKMIFNHPLTPPSTSSLIICARIDAVSNLKFPCLPSVEELPAGSIDEMTSFTEGVVRNMVCLKTLNIHAIKGVKVLPDQISRLGALELLFIQDWYGLEYFSEHALDGLTCLRTLIIGNCKQLKSLSEGVRHLTCLESLEISNCPKLVALPSNMSQLTVLRKVSIRLCSSLPYGLQRVPFLRILGIHHCKYMANLQELSIMFCEELRSLPSSIQRLTDLSKLRIEECPHLEAMQEGNRE 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03330 540 ProSiteProfiles Ankyrin repeat region circular profile. 108 135 - -
Vimu7g03330 540 Gene3D Ribonuclease Inhibitor 195 469 IPR032675 -
Vimu7g03330 540 ProSiteProfiles Ankyrin repeat region circular profile. 75 104 - -
Vimu7g03330 540 ProSiteProfiles Ankyrin repeat region circular profile. 42 68 - -
Vimu7g03330 540 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
Vimu7g03330 540 SUPERFAMILY Ankyrin repeat 13 159 IPR036770 -
Vimu7g03330 540 SUPERFAMILY RNI-like 332 531 - -
Vimu7g03330 540 PANTHER ANKYRIN REPEAT CONTAINING 4 274 - -
Vimu7g03330 540 SMART ANK_2a 8 38 IPR002110 GO:0005515
Vimu7g03330 540 SMART ANK_2a 42 71 IPR002110 GO:0005515
Vimu7g03330 540 SMART ANK_2a 75 104 IPR002110 GO:0005515
Vimu7g03330 540 SMART ANK_2a 108 137 IPR002110 GO:0005515
Vimu7g03330 540 MobiDBLite consensus disorder prediction 165 246 - -
Vimu7g03330 540 MobiDBLite consensus disorder prediction 165 187 - -
Vimu7g03330 540 MobiDBLite consensus disorder prediction 203 246 - -
Vimu7g03330 540 Gene3D - 6 182 IPR036770 -
Vimu7g03330 540 Gene3D Ribonuclease Inhibitor 470 537 IPR032675 -
Vimu7g03330 540 ProSiteProfiles Ankyrin repeat profile. 42 74 IPR002110 GO:0005515
Vimu7g03330 540 PRINTS Ankyrin repeat signature 91 105 IPR002110 GO:0005515
Vimu7g03330 540 PRINTS Ankyrin repeat signature 43 58 IPR002110 GO:0005515
Vimu7g03330 540 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Vimu7g03330 540 Pfam Ankyrin repeats (3 copies) 80 158 IPR002110 GO:0005515
Vimu7g03330 540 Pfam Ankyrin repeats (3 copies) 13 70 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03330 Vimu-Chr7 28231518 28234879 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03330 5 175 Miscellaneous Gene Families AT5G02620 30.851 1.26e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03330 - - gmx:100812821 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03330 7 28231518 28234879 Vimu7g03330 7 28231518 28234879 ECH