Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03312 ATGATGGAGAGCAACGAGATTCTAGAGGAGCTTCTCAACATCGAGGTCGAGATTCAAGATGTTCAAGAACAAATAAGGGCGTTGATTGAGAGACAAGAGAATCTGTACGAGAGAAAATCGGAGCTGAGTGCTATTCTAGAGGCGTGTAAGGAATCTGGAAACGAGGCCAGTAATGTGGCTTCAAGCGCCGTGGAAGATTGGAGTGGGACATTTGAATGGGATTCTGAAGCAGACGATGTTAGGTTGAATGTTTTTGGCATTTCATCTTACCGTGCAAATCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGAGACGTTCTGGTTATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGAAGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACTGCACTGGGCATTCCTGCGTATATGTTGACTTCAACAAATAAGGGAGATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGAGAGGGGGACCTCAAAGTATTGTACGTCACCCCAGAAAAGATATCGAAAAGCAAGAGATTTATGTCAAAACTTGAAAAATGCCATCATGCCGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAGTGGGGCCATGACTTTCGACCTGACTACAAGAGCCTTGGTATTCTCAAGACACAGTTTCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAACGATCTGACAGAGATGTTGCATATTCCTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAATTTGTTTTATATGGTAAAGGAAAAGTCATCAGTTGGGAAGGTAGTCATTGATGAAATTGCACAATTCATTCAAGAGTCTTATTCAAATAATGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCGAAGGAGTTAAGGGAGAGAAGAATTTCAGCTGATTATTATCATGCAGATATGGATGTAAATGCTCGGGAAAAAGTTCATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGCACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTGGATGTGCACATTGTATTTGCTTTACCTTCATTGAAGCTGATAACATTTAACGCTAGACATTTTCTTGTAGTCAGGTTTGTCATCCATCATAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGACGAGCTGGCCGAGATGGACTTCCTTCGGAATGCCTACTGTACTTTAGGCCTGGTGATGTTCCACGGCAGAGTTCAATGGTCTTCTATGAAAATTCGGGGCTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGACAATGTCGACGAAGTGCCTTTTTCCGACATTTTGCTGAGCCACTTCAAGAGTGCAATGGGATGTGTGACATCTGTGCATTGTCAAGAGAGGTGAAAGAAGTGGATGTCTCTGATCTTGCAAAACTGATGGTTTCATTGTTGCAAAATATGCAAGCAAATGATCAGAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAGCGAGAGGAAATTGAGCAGCTCATCTTACACCTTTTATTGGGACGCTTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCCACAAATGCCTACATTGCCGTGGGGCCATTGGCCAAGCAAATACTACAAGGGAAGAAAACTGTGACACTTGAGATTTACACTGAACAGAATGCTGGTGTAAGATCAGTGAAGCGTCGCTGCCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAGCTGTCCTATGCTGGAGGAATACTCCCACACTCAGTCTTATCCATGGAACAAATCCGCTTATTAAGTTCTCAAAAACCAAATTCCCTGGAACAGGCAAGTTTTAAGTATTTGGAGAAGGTAATTGGAAAATTGAAGACAGAAAAGTACGGAAGTAGAATACTTAAGCAAATTAAAAAGTATTCGGATTCCGAGCCGACTGATAAACAAGAAACTGATGGAAGAGCAGCAAAGAGGTCAAAAACCAAGAAAAATGTAGTTATTGTTGACAGTAATGAAGATGAGGATTGA 2190 0.4146 MMESNEILEELLNIEVEIQDVQEQIRALIERQENLYERKSELSAILEACKESGNEASNVASSAVEDWSGTFEWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKALEKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLGILKTQFPNVPMVALTATATQRVQNDLTEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAQFIQESYSNNESGIVYCFSRKECEQVAKELRERRISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVDVHIVFALPSLKLITFNARHFLVVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICALSREVKEVDVSDLAKLMVSLLQNMQANDQRSTMLQLVDKMKIKQKELGSELKREEIEQLILHLLLGRFLKEEFQHTAYATNAYIAVGPLAKQILQGKKTVTLEIYTEQNAGVRSVKRRCLGSSGLELKLDELRKELSYAGGILPHSVLSMEQIRLLSSQKPNSLEQASFKYLEKVIGKLKTEKYGSRILKQIKKYSDSEPTDKQETDGRAAKRSKTKKNVVIVDSNEDED 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03312 729 Gene3D - 47 279 IPR027417 -
Vimu7g03312 729 FunFam ATP-dependent DNA helicase 49 279 - -
Vimu7g03312 729 FunFam ATP-dependent DNA helicase 504 604 - -
Vimu7g03312 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 447 IPR027417 -
Vimu7g03312 729 Coils Coil 536 556 - -
Vimu7g03312 729 CDD SF2_C_RecQ 280 440 - -
Vimu7g03312 729 Coils Coil 4 38 - -
Vimu7g03312 729 MobiDBLite consensus disorder prediction 694 723 - -
Vimu7g03312 729 Pfam Helicase conserved C-terminal domain 301 430 IPR001650 -
Vimu7g03312 729 CDD DEXHc_RecQ1 72 279 - -
Vimu7g03312 729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 272 IPR014001 -
Vimu7g03312 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 470 IPR001650 -
Vimu7g03312 729 Pfam RecQ zinc-binding 443 499 IPR032284 -
Vimu7g03312 729 PANTHER DNA HELICASE RECQ FAMILY MEMBER 68 633 - -
Vimu7g03312 729 SMART RQC_2 508 605 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vimu7g03312 729 Gene3D - 280 500 IPR027417 -
Vimu7g03312 729 Gene3D - 504 604 IPR036388 -
Vimu7g03312 729 SMART ultradead3 86 288 IPR014001 -
Vimu7g03312 729 NCBIfam RecQ family ATP-dependent DNA helicase 83 390 IPR004589 GO:0004386|GO:0006310
Vimu7g03312 729 Gene3D HRDC domain 622 696 IPR044876 -
Vimu7g03312 729 Pfam DEAD/DEAH box helicase 92 259 IPR011545 GO:0003676|GO:0005524
Vimu7g03312 729 SMART helicmild6 326 431 IPR001650 -
Vimu7g03312 729 MobiDBLite consensus disorder prediction 694 729 - -
Vimu7g03312 729 Pfam RQC domain 505 608 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03312 Vimu-Chr7 28062133 28071462 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03312 K10899 - gmx:100817635 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03312 7 28062133 28071462 Vimu7g03312 7 28062133 28071462 ECH