Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03271 ATGGCGAGTGATTTTGGCGCGAACGGTCCTTCAACTTCTCCGTCAAATTCCGCGGAGTCCTTCATTGGCTGCTTCATAAGCTTGATTTCGAAGTGCGAGATTCGCTACGAGGGCGTTCTGTATCTCCTCGACGTCCAAGATTCCACCATCGGCTTGAAGAACGGTACGCTACATGCTAGAATTTCCATTTCCATTTCTTTTGTAAACCTGGAAGGACAGGGGCTTAAATCTTATGGAACGGAGGGGAGAAGAAAAGATGGCACACAAATTCCTCCAAGTGATAAGGTTTATGAATACATTCTTTTCCGTGGAAGTGACATTAAGATCAAGTCACCCTCCACTTCTTCTAAATCAGAAGAGCAGATTCTCAGTGATCCAGCTATTATTCAGTCACGATATTCTGGGTCCCCAAGTTCCCCTGTGGCCTCAGTTGGAGGTAGAAATTTGACAGAATCAATCCAAAGGCAAGATACCCCTGAGATATCTAGTAAACCCTTTCCTGTTGGGTTGCCTTCTTATCAGTTGGTAACTGAACTGGGACCTTCAAATTCATCTGTTGCTACTCAAGTTGCCAGTCATCCATCTTTTTCTTCAGCAATGAGTTGGCAAGGGCCTAGTGATGTATCTAGCAGTGGTTCTAATTCTCTGCTACAATCTAGTTCCCTTTACTCCCCATCAATGGCAGCATCTGTAGTTGTGCAGAATCAGATTAAAAATGAAGAAACTCAGTTACCTACAAAGGGGGGATGGACAAGTTTTTCAGAGCGTGGTCTACCTATGTCTTCTGCCATGACTTCTTCTCTTGTTAATCTGACTCATTTGCATTCTCTTACCTCTTTAAAAAATTCTGATTCTCTTGATATTCCATCCCTTTCGATACCTGTGCCATATTCTGCATCCATGACTTTTGACGGATCAAACATGCCCCAGTTTTCTTCACCATATCAAGACATCTGTCCTGATCCAAGGCCAATTCATCCTCGACATTCTGCTCCTTCATTTGTAGATTCTACTCCAGGTCTCTTGCCAACAACACCATTTTTGTTAACTCCAGATCAATTTGCAAATCCTAGAGAACAGTTATTATCTACTTCACATAATTTGAACCCTAATCAAAAGGGTATGGGTTCTTTGACTCAAGCATCATTAGTGCCATTTCCAGCATCTCAGGCACCGCTCCTTCCATTACCCACTTCAGTGCAAAAGGTTAGAAAATTTGCTCATATGCTCTTTATGGGAGTAGAGTAG 1248 0.4271 MASDFGANGPSTSPSNSAESFIGCFISLISKCEIRYEGVLYLLDVQDSTIGLKNGTLHARISISISFVNLEGQGLKSYGTEGRRKDGTQIPPSDKVYEYILFRGSDIKIKSPSTSSKSEEQILSDPAIIQSRYSGSPSSPVASVGGRNLTESIQRQDTPEISSKPFPVGLPSYQLVTELGPSNSSVATQVASHPSFSSAMSWQGPSDVSSSGSNSLLQSSSLYSPSMAASVVVQNQIKNEETQLPTKGGWTSFSERGLPMSSAMTSSLVNLTHLHSLTSLKNSDSLDIPSLSIPVPYSASMTFDGSNMPQFSSPYQDICPDPRPIHPRHSAPSFVDSTPGLLPTTPFLLTPDQFANPREQLLSTSHNLNPNQKGMGSLTQASLVPFPASQAPLLPLPTSVQKVRKFAHMLFMGVE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03271 415 Pfam Scd6-like Sm domain 21 108 IPR025609 -
Vimu7g03271 415 PANTHER SCD6 PROTEIN-RELATED 16 54 - -
Vimu7g03271 415 SMART LSM14_2 15 133 IPR025609 -
Vimu7g03271 415 CDD LSm14_N 18 108 IPR025609 -
Vimu7g03271 415 Gene3D - 12 113 - -
Vimu7g03271 415 SUPERFAMILY Sm-like ribonucleoproteins 20 108 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03271 Vimu-Chr7 27728971 27732356 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03271 K18749 - gmx:102669894 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03271 7 27728971 27732356 Vimu7g03271 7 27728971 27732356 ECH