Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03268 ATGGCGTGCCTCTGTTCCTCACGATCTACACCGTTGTCATCATTGGCATCGTTTTTTCCTCACTCTACGTCTTCTCCGCCATTCGCTATCCCTCCACCAACCCCTCTTCTTGGTCGCTTTCAAGATGTTCATCTTACAGAACAGACGCTCAACGGTTCTCGGTTAGCAACCGGGCATGCTGTGCCTTCTGTTCCTCCGGAGGCACGAAATGTGAGGACAAGACCTATTTTAGATGTTCCTCCACGCAATAAAGAGATGCCACCTTTTGAGGCTTTCAGATTGACCAAAGAATTGATTCAGAAAAGGTTGAATGATCTGGAAGTTTCTAATTATCTTGTGGGTGAGTGTTTCAATTTAATGCTTCTAACTTTCACTGTCATGTGTTTTCTTATCGCCCTTGATAGAGATGCATATCCGGCCTGTATTGTGTACGGTGCAATGGACACCAAGTTGTTGGAGGCGCTTTATTGGAAAGGGATACCTGTTTTTGACATGGGCAGCCATATGAGTACAGAAGATGTTGGCTGGGGTTCTCCAACATTTCATAAAATGGGGAGAGAAAAGGTTATCCTGATCAACTTGATCCTGCCTCTTGGTTACGAGCTGTTGATGTGTGACACTGACATGGTTTGGTTGAAGAACCCACTTCCATATCTAGCTCGTTATCCTGGAGCAGATGTTTTAACATCCAGTGATCAAGTTGTTCCAACAGTGGTTGATGATAGTCTGGAAATTTGGCAAGAAGTTGGTGCTGCCTACAACATAGGAATTTTCCATTGGAGACCTACCGAGTCTGCAAAAATATTAGCGAAGGAATGGAAAGAACTGCTCCTAGCTGATGACAAGATATGGGATCAGAATGGTTTCAATGATCTTGTTCACAGGCAGTTAGGACCGTCAGTTGATGAGGACAGTGGACTTGTCTATGCTTATGATGGAAATCTAAAGCTAGGAATTTTGCCTTCAAGCATCTTTTGTAGTGGACATACATATTTTGTCCAGGCTATGTACCAGCAACTCAGATTGGAGCCATATGCAGTGCATACAACATTTCAATATGCAGGCACTGAAGGAAAGCGCCACCGACTTCGTGAAGCCATGCTTTTCCGTGACCCACCAGAATACTATAATCCTTCTGGGGGGTTCTTGTCATTCAAGCCATCTATTCCAAAAAGCCTGTTGCTAAGTGGGAATCATACCATCGAATCACATTTTACACTTGTTAATTACCAAATAAAACAGATCAGAACGGCACTTGCTATTGCTTCTCTTTTGAACAGAACACTGGTTGTGCCTCCATTATGGTGCAGGGTTGATAGGCTATGGTTTCCCCATCCTGGTGTTTTGGAGGGGTCTATGACCAGACAACCTTTTCTCTGTCCACTGGATCATGTATTTGAGGTAAATGTCATGTTGAAACAACTTCCAGAGGAAGAGTTCGGCCCCGGAATAGATATTAGAGAGTACTCGTTACTTGACAACCCCTCGCTCCCCTCAGAGGTGAAGAATTCATGGCTTGATGTTCAGCTCTGTAAGGAAGGAGCTCAAGATTGTTTTGCATCAAATAATACCACTATTGGGGGAGTACTCAAATTTCCAAAGCATAGCAATGAAGAAACGTACATGAAAGTATTTTCATCATTCAAGGATGTAAAAGTCATCCAGTTCTCTTCAATGCAAGACGCTTTCACAGGTTTCAGCGACAAGGCAAGGACTACTTTACTCATTTCATTTGAAGAAAGGGAGGACAAATTTAGAAACCGTGTTAAACGGTATGTGGGTATATGGTGCTGCGTGTTTGATCACACTCCTGGCCACATTTATTACGATATGTACTGGGATGAGAAGCCTGAATGGAAGCCTCTCCCTCCTCAAACTTCTGCAGATGATCATCCACCATGCATGCTTCGTACCAAGTTTCCAACATTGCAGTATTTTAGCCCTGATGTCTCTGTTGATATTGAATTGCCTCCTTGCTTGGACCTGGAATATGACAATCATTCCATTCAATTTCTTCGCATAACCACCAAACTGGGAACTTCATCATTGTTAAACGACGACACAGGATCCCCTGTCATTCGGCTGTTTGAGGAAATGCCACACAGAACTCTACGTGCGAGTGATATTCATTTTCAGCTTGTTGATTATATCAAACTGTCCCTCAGAAAGCCAAAAATTGTGAGTGCCACTGCTGCCCATTGTGCAGCATTAAAGTTAGGTGCTCTGGCTCACCTCCCAAACTCAACATCTCTACTCACTGTTTATTCTAGGGCTGGAGATTTTTCCTCCTCAAAGAGTTTGTTTGATGAGATTCCCAACAGAGATGTGATTGCTTGGAATGCTATTGTTGCAGCATCTCTTGAAAATAAGTGCTATAGAACAGCAATGGACTTCTTAGAGAAAATGATCAAGGCCGAAACTGGGTTTGATTCCACTACTCTATTGCTTATGGTGTCGGCTTCTTCACTGATAAAAAACTTTGACCAAGGACGGGTAATTCATTGTGTGAGTATAAAATCTGGGATGCTAAAGCATATCGGTTTAGGTAATGCTCTTATTGACATGTATGCTAAGTGCGGTGATCTAAGCTCTTCCGAGGGTGTATACGAAGAGATGGAAAGTAAAGATATTATTTCGTGGAATTCGATAATGAGAGGCAGTATTTACAATGGGGATCCAGTGAATGCATTGTATTACTTCAAAAGGGTGAGTTTTTCTGAAGAAACAATAGACAGTGTCAGTCTATCTTGTGCCATTTCAGCATCTTCAAGTTTGGGAGAGCTGGCTCTTGGCCAGTCCATTCACGGGCTGGGAATCAAGCTAGGTTACAAGGACAGCTCGTACGTTTCAGTTGCCAACTCTCTTATTTCATTATATTCACAATGTGAAGACATCAAAGCTGCTGAAACAGTGTTCAGAGAAATATCACTCAAAGATACTGTTTCCTGGAATGCAATGATGGAAGGATTTGCATCAAATGGAAAATTTAATGAAGTATTCGATCTTCTGGTTGAAATGCAAATAGTAGGGTCGTTCCCACCTGATGTGGTGACATTAACTACTATACTTCCACTTTGTGCGGAACTGATGCTCTACAGAGAAGGAAGAACCATCCATGGATTTGCAATTAGAAGACAGATCATGGTATCTCATCATGTCATGTTACTGAACAGCCTGATAGACATGTATTCAAAGTGCAACCTGGTGGAGAAAGCTGAGCTCTTGTTCAATTCTACCATAGAGAAGGACTCGGTCTCATGGAATATAATGATATCTTGCTATTCCCATAACAGGTATTCTGATGAAGCTCAAAAATTGTTCAGAGAGATGCTACGTTGTGGCCTAAACTGCAGCTCCTCGACCGTTTTTGCTATTCTTTCTTCTTGCGACTCCCTTAACAGTCTCCATTTTGGAAAATCAGTTCACTGCTGGCAGTTGAAATCTGGATTTTTGAACCACATTCTTTTAATAAATTCTCTCATGCATATGTACATCAATTGTGGATACTTAGCTGCCAGTTTTTCAATTTTGTATGAGAATTCTGCATTAGCAGATATAGCTTCATGGAACACACTAATTGTGGGTTGTGTGCGATGCGACCATATCAGAGAGGCTCTAGATATTTTCAAGTTGATGAGACAGGAACCTCCTTTCAACCATGACTCCATAACCCTTGTAAATATCTTGTATGCCTGTGCAAACCTGGAACTGTCAAGCCTAGGAAAGTCTCTGCATGGCCTTGCACTTAAGACTCCTTTGGGATCAGATACACGGGTTCAGAACTCATTAATTACTATGTATGGCAGGTGCAGAGACATCAGCAGTGCCAAAGTAGTGTTCAAATTCTGTTCCATTCCCAATCTTTGCTCATGGAATTGCATAATCTCAGCTTTATCTCATAATGGAGAAAGTAGAGAAGCATTGGAACTATTTCGCCATATTCAGTTTGAACCAAATGAGATCACCATTGTTAGTTTTCTCTCTGCTTGCACACAAATCGGTGTCCTAAGACATGGAAAACAGGCCCATGCCCATGTGTTAAGGACTGGCATTGGAGATAATTCCTTCATATCAGCAGCTCTTATAGATTTCTACAGCAACTGTGGAAGATTGGACAGTGCCTTACACGTATTCAGACATGCAAAGGAGAAGTCAGAATCAGGTTGGAATTCGATGATTTCTGCATATGGATATCATGGAAAGGGTGAGAAAGCAGTCAAACTCTTCAATGAAATGTGTGAGTCAGGAGAAAGGGTGAGCAAAAGCACTTTTGTTAGCCTTTTATCTGCATGCAGGCATTCGGGACTTGTGAAGCAAGGCATTTGGTACTATGAGTGTATGTTGGAGAAATATGGAGTGCAACCTGAGACTGAGCATCAAGTATATGTGGTTGACATGCTTGGGAGATCAGGTAGACTGGATGAGGCTTACGAGTTTGCTAAGGGGTGTGACAGCTCAGGTGTTTGGGGAACTCTCCTAAGTGCATGCAACTATCATGGAGAACTCAAGTTGGGAAAACTAGTTGCTCAACATCTCTTTCAATTGGAACCTCACAATGTTGGATATTACATATCATTGTCAAATATGTATGTAGCTGCAGGAAGCTGGAAAGATGCTACCGACTTGAGACAATCAATCCAGGATTTAGGTTTAAGAAAAACCGCAGGTTACAGTCTTATTGATTTTGATTTCTGA 4695 0.4202 MACLCSSRSTPLSSLASFFPHSTSSPPFAIPPPTPLLGRFQDVHLTEQTLNGSRLATGHAVPSVPPEARNVRTRPILDVPPRNKEMPPFEAFRLTKELIQKRLNDLEVSNYLVGECFNLMLLTFTVMCFLIALDRDAYPACIVYGAMDTKLLEALYWKGIPVFDMGSHMSTEDVGWGSPTFHKMGREKVILINLILPLGYELLMCDTDMVWLKNPLPYLARYPGADVLTSSDQVVPTVVDDSLEIWQEVGAAYNIGIFHWRPTESAKILAKEWKELLLADDKIWDQNGFNDLVHRQLGPSVDEDSGLVYAYDGNLKLGILPSSIFCSGHTYFVQAMYQQLRLEPYAVHTTFQYAGTEGKRHRLREAMLFRDPPEYYNPSGGFLSFKPSIPKSLLLSGNHTIESHFTLVNYQIKQIRTALAIASLLNRTLVVPPLWCRVDRLWFPHPGVLEGSMTRQPFLCPLDHVFEVNVMLKQLPEEEFGPGIDIREYSLLDNPSLPSEVKNSWLDVQLCKEGAQDCFASNNTTIGGVLKFPKHSNEETYMKVFSSFKDVKVIQFSSMQDAFTGFSDKARTTLLISFEEREDKFRNRVKRYVGIWCCVFDHTPGHIYYDMYWDEKPEWKPLPPQTSADDHPPCMLRTKFPTLQYFSPDVSVDIELPPCLDLEYDNHSIQFLRITTKLGTSSLLNDDTGSPVIRLFEEMPHRTLRASDIHFQLVDYIKLSLRKPKIVSATAAHCAALKLGALAHLPNSTSLLTVYSRAGDFSSSKSLFDEIPNRDVIAWNAIVAASLENKCYRTAMDFLEKMIKAETGFDSTTLLLMVSASSLIKNFDQGRVIHCVSIKSGMLKHIGLGNALIDMYAKCGDLSSSEGVYEEMESKDIISWNSIMRGSIYNGDPVNALYYFKRVSFSEETIDSVSLSCAISASSSLGELALGQSIHGLGIKLGYKDSSYVSVANSLISLYSQCEDIKAAETVFREISLKDTVSWNAMMEGFASNGKFNEVFDLLVEMQIVGSFPPDVVTLTTILPLCAELMLYREGRTIHGFAIRRQIMVSHHVMLLNSLIDMYSKCNLVEKAELLFNSTIEKDSVSWNIMISCYSHNRYSDEAQKLFREMLRCGLNCSSSTVFAILSSCDSLNSLHFGKSVHCWQLKSGFLNHILLINSLMHMYINCGYLAASFSILYENSALADIASWNTLIVGCVRCDHIREALDIFKLMRQEPPFNHDSITLVNILYACANLELSSLGKSLHGLALKTPLGSDTRVQNSLITMYGRCRDISSAKVVFKFCSIPNLCSWNCIISALSHNGESREALELFRHIQFEPNEITIVSFLSACTQIGVLRHGKQAHAHVLRTGIGDNSFISAALIDFYSNCGRLDSALHVFRHAKEKSESGWNSMISAYGYHGKGEKAVKLFNEMCESGERVSKSTFVSLLSACRHSGLVKQGIWYYECMLEKYGVQPETEHQVYVVDMLGRSGRLDEAYEFAKGCDSSGVWGTLLSACNYHGELKLGKLVAQHLFQLEPHNVGYYISLSNMYVAAGSWKDATDLRQSIQDLGLRKTAGYSLIDFDF 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03268 1564 FunFam Pentatricopeptide repeat-containing protein chloroplastic 828 929 - -
Vimu7g03268 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1287 1317 IPR002885 -
Vimu7g03268 1564 Gene3D Tetratricopeptide repeat domain 1358 1556 IPR011990 GO:0005515
Vimu7g03268 1564 Pfam E motif 1499 1560 IPR046848 -
Vimu7g03268 1564 NCBIfam pentatricopeptide repeat 1188 1214 IPR002885 -
Vimu7g03268 1564 NCBIfam pentatricopeptide repeat 1085 1117 IPR002885 -
Vimu7g03268 1564 NCBIfam pentatricopeptide repeat 1290 1315 IPR002885 -
Vimu7g03268 1564 NCBIfam pentatricopeptide repeat 1389 1418 IPR002885 -
Vimu7g03268 1564 NCBIfam pentatricopeptide repeat 981 1010 IPR002885 -
Vimu7g03268 1564 Pfam PPR repeat 850 877 IPR002885 -
Vimu7g03268 1564 Pfam PPR repeat 953 975 IPR002885 -
Vimu7g03268 1564 Pfam PPR repeat 1057 1081 IPR002885 -
Vimu7g03268 1564 Pfam PPR repeat 749 774 IPR002885 -
Vimu7g03268 1564 Pfam PPR repeat 1188 1214 IPR002885 -
Vimu7g03268 1564 Pfam PPR repeat 1290 1313 IPR002885 -
Vimu7g03268 1564 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 1240 1345 - -
Vimu7g03268 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1385 1419 IPR002885 -
Vimu7g03268 1564 FunFam Pentatricopeptide repeat-containing protein At4g39530 1034 1137 - -
Vimu7g03268 1564 FunFam Pentatricopeptide repeat-containing protein 1359 1556 - -
Vimu7g03268 1564 Gene3D Tetratricopeptide repeat domain 1032 1141 IPR011990 GO:0005515
Vimu7g03268 1564 Gene3D Tetratricopeptide repeat domain 1142 1240 IPR011990 GO:0005515
Vimu7g03268 1564 Gene3D Tetratricopeptide repeat domain 744 830 IPR011990 GO:0005515
Vimu7g03268 1564 Gene3D Tetratricopeptide repeat domain 943 1031 IPR011990 GO:0005515
Vimu7g03268 1564 Gene3D Tetratricopeptide repeat domain 831 932 IPR011990 GO:0005515
Vimu7g03268 1564 Gene3D Tetratricopeptide repeat domain 1242 1346 IPR011990 GO:0005515
Vimu7g03268 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1185 1215 IPR002885 -
Vimu7g03268 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 979 1013 IPR002885 -
Vimu7g03268 1564 Pfam Nucleotide-diphospho-sugar transferase 143 363 IPR005069 -
Vimu7g03268 1564 Pfam PPR repeat family 1387 1431 IPR002885 -
Vimu7g03268 1564 Pfam PPR repeat family 978 1024 IPR002885 -
Vimu7g03268 1564 Pfam PPR repeat family 1082 1128 IPR002885 -
Vimu7g03268 1564 PANTHER OS07G0578800 PROTEIN-RELATED 688 870 IPR045215 GO:0003723|GO:0009451
Vimu7g03268 1564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1083 1117 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03268 Vimu-Chr7 27641923 27652876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03268 676 931 Glycoside Hydrolase AT3G49170 22.481 7.97e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03268 - - gmx:100775736 1446.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03268 7 27641923 27652876 Vimu7g03268 7 27641923 27652876 ECH
Vimu7g03268 7 27641923 27652876 Vimu11g00995 11 10424125 10435347 PCT