Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03267 ATGGCCGATCGCTTGACGCGTATTGCCATAGTTAGCAACGACAGGTGCAAGCCCAAGAAGTGTCGCCAGGAGTGCAAGAAGAGTTGTCCAGTGGTCAGAACCGGTAGATTGTGTATTGAGGTTACTTCAGCTTCGAAGATTGCTTACATTTCTGAGGAATTGTGCATTGGATGCGGTATCTGTGTTAAGAAATGTCCTTTTGAAGCTATTCAGATTATTAACTTGCCAAAGGACTTGGATAAGGATACTACTCATAGATACGGTCCCAATACTTTTAAGCTGCATAGGTTGCCGGTGCCAAGGCCCGGGCAGGTGCTTGGATTGGTCGGGACGAATGGGATTGGGAAGTCCACTGCCCTTAAGGTTTTGGCTGGGAAGTTGAAGCCGAATTTGGGTCGATTTACTAATCCCCCTGACTGGCAAGAAATTTTGACATACTTTCGAGGATCCGAATTGCAGAATTACTTTACTCGAATCCTCGAGGATGATTTGAAGGCTATCATCAAGCCTCAGTATGTTGACCATATTCCAAAAGCTGTGCAAGGAAATGTGGGCCAGGTGCTAGACCAGAAAGATGAGAGAGACATGAAGAAGGAGCTTTGTGCAGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGGGATCTTTCAGGTGGTGAGCTCCAAAGGTTTGCCATTGCGGTTGTTGCAATCCAGAATGCTGAGATATACATGTTTGATGAACCTTCTAGTTATCTTGATGTGAAACAGAGGCTGAAAGCTGCACAAGTTATTCGATCATTGCTCAGGCCTAATAGTTATGTAATTGTTGTAGAGCATGATCTTAGTGTCTTGGACTACTTATCAGACTTTATTTGCTGTCTATATGGCAAACCTGGTGCATATGGAGTGGTGACACTTCCTTTCTCTGTCAGAGAAGGAATTAACATCTTCTTGGCTGGCTTTGTTCCGACAGAAAATCTGAGGTTCCGGGACGATTCTCTAACCTTCAAGGTTGCTGAGACTCCACAGGAAAGTGCTGAGGAAGCTCAGACATATGCTCGATATAAATACCCAACAATGACCAAAACTCAAGGCAATTTTAGACTTCGTGTAGTTGAAGGAGAATTTACTGATTCTCAGATTATTGTGATGCTGGGTGAGAATGGGACAGGAAAGACAACATTCATTCGTATGCTGGCTGGTTTATTGAAACCTGACAGCATAGAAGGTGGATCTGATGTGGAGATGCCTGAATTTAATGTTTCGTACAAGCCTCAGAAGATTAGTCCGAAGTTCCAATCAACTGTTAGGCACTTGCTACATCAAAAAATACGTGATGCATATACTCATCCCCAGTTTGTTTCAGATGTGATGAAGCCACTTCTTATTGAACAGTTAATGGACCAAGAAGTTGTGAATCTTTCTGGAGGAGAGTTGCAGCGAGTTGCTCTGTGTCTCTGTCTTGGCAAGGCAACTAATGTCAAGTTTGGTGTCATTCCATGTGGTGAAAATGAGTTTGGTGCTAATCCCGTTGCAACTTTTTGGGATTGCATGCCTGCAGATATCTATCTGATAGATGAGCCAAGTGCATATCTAGATTCTGAGCAGCGAATTCATGCTGCCAAAGTGATCAAGAGGTTTATTCTTCATGCAAAGAAAACGGCTTTTGTCGTTGAGCATGATTTCATCATGGCAACTTATCTCGCAGACAGAGTTATTGTTTATGCCGGTCAACCATCAATTGATTGTGTTGCAAATTCTCCTCAATCATTGTTGTCTGGGATGAACCTTTTCTTATCGCATCTTGATATCACATTTAGAAGGGACCCAACTAATTTTCGCCCAAGGATTAACAAACTTGATTCAACCAAGGACAGAGAACAAAAGTCTGCTGGGTCTTATTATTACCTTGATGACTGA 1905 0.4262 MADRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVTSASKIAYISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKKELCADLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQESAEEAQTYARYKYPTMTKTQGNFRLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSIEGGSDVEMPEFNVSYKPQKISPKFQSTVRHLLHQKIRDAYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKATNVKFGVIPCGENEFGANPVATFWDCMPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYAGQPSIDCVANSPQSLLSGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDREQKSAGSYYYLDD 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03267 634 Pfam ABC transporter 367 488 IPR003439 GO:0005524
Vimu7g03267 634 ProSitePatterns ABC transporters family signature. 469 483 IPR017871 GO:0005524|GO:0016887
Vimu7g03267 634 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 597 IPR003439 GO:0005524
Vimu7g03267 634 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 46 75 IPR017896 -
Vimu7g03267 634 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 489 IPR013283 -
Vimu7g03267 634 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 55 66 IPR017900 -
Vimu7g03267 634 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 315 IPR003439 GO:0005524
Vimu7g03267 634 Pfam 4Fe-4S binding domain 49 71 IPR017896 -
Vimu7g03267 634 Pfam ABC transporter 102 244 IPR003439 GO:0005524
Vimu7g03267 634 SMART AAA_5 373 575 IPR003593 GO:0016887
Vimu7g03267 634 SMART AAA_5 102 294 IPR003593 GO:0016887
Vimu7g03267 634 Gene3D - 1 332 IPR027417 -
Vimu7g03267 634 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Vimu7g03267 634 FunFam ATP-binding cassette, sub-family E, member 1 1 332 - -
Vimu7g03267 634 CDD ABC_RNaseL_inhibitor_domain1 78 332 IPR034348 -
Vimu7g03267 634 Gene3D - 333 632 IPR027417 -
Vimu7g03267 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 291 IPR027417 -
Vimu7g03267 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 570 IPR027417 -
Vimu7g03267 634 PRINTS ABC transporter family E signature 52 76 IPR013283 -
Vimu7g03267 634 PRINTS ABC transporter family E signature 79 99 IPR013283 -
Vimu7g03267 634 PRINTS ABC transporter family E signature 24 39 IPR013283 -
Vimu7g03267 634 PRINTS ABC transporter family E signature 140 156 IPR013283 -
Vimu7g03267 634 PRINTS ABC transporter family E signature 107 132 IPR013283 -
Vimu7g03267 634 PRINTS ABC transporter family E signature 156 182 IPR013283 -
Vimu7g03267 634 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 6 37 IPR007209 -
Vimu7g03267 634 SUPERFAMILY 4Fe-4S ferredoxins 6 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03267 Vimu-Chr7 27635674 27640238 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03267 K06174 - gmx:100797423 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03267 7 27635674 27640238 Vimu7g03267 7 27635674 27640238 ECH