Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03248 ATGGTACGCATCACTGCACCTGTGGCAACAGTACCAACCCACCACCTATTCTTCGACCAAAAGCTTGATCTGAAGAACAACAACCCAAGTAGTTTGCCTTCTCCCAGCCATCAACTCGAGCTTCTACCACCGCTGCGCTACCCCATTCACACTTTTCCGCGTCCCCTCATTCCTCAAACAACTACTTTCACCATGAAGAAGCCAAAGAAAAAGAAAAGAAAAGAGGCTACAACCTCAGACATATTGCACTTGATGGACGCTCTACCTTTTCCTATACCCATTGACATCTATACCTCATTGATAAAAGAGTGCACTGTTTCCGGTGACCCAGAAACTGCCATTGAGTTGTACACCCACATCTCCAAGAGCGGCATCAAACCCCCCTTGCCTTTCCTCAATCGGATTCTCATTATGTTTGTGTCCTGTGGCCTGTTGGAAAATGCACGCCACATGTTTGACAAAATGCGTGTGAGGGACTTCAACTCTTGGGCGACCTTGTTTGTTGCGTACTATGATAATGCTGATTATGAGGAGGCTAAGGCTGTTTTTGTCAACATGTTAGGGCAATTGGGTACGTTGGAGTTTCCTCCGTGGATATGGGCTTGTCTTCTCAGGGCTTGTGCATGCACTTTGGATATCCCTCTGGGATTGCAAGTTCATGGATGGTTGTTGAAGTTGGGTACTTGTGATCATGTGCTTCTCAGCAGCTCTTTGATAAACTTTTACGGGAGATTCACGAGCCTGGAAGATGCGAGTGCTATCTTCAATGGGGTGTCGCGGCATAACACGCTGACTTGGACGGCTAAAATCATTAGTGGTTGCAGGGAAAGTCATTTCTCTGAGGCTTTTGGCGACTTCAGGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTCACGTTTTCTAGTGTTCTCAAGGCGTGTGGAAAGATGCTGAATCAGGAACGATGTGGTGAACAAGTCCATGCTGATGCCATCAAACTTGGGCTGGTCTCGGATCACTACGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGTGGGTTTTTGAGAGATGCAAAACAAGTGTTTGAGATGATCCGAGAGGAGAAAAAGGTTGATTGCTGGAATGCTATGCTTTCGGGTTACACAAGGAATGGTTTCTACATCGAAGCTGTTAAGTTTCTGTATCAGATGCAGGCAGCTGGAATGCAGCCCCGGGAATCTCTGCTTAAAAAATTAAGAATTGCTTGTGGCAGTACTCAAACATGA 1251 0.4644 MVRITAPVATVPTHHLFFDQKLDLKNNNPSSLPSPSHQLELLPPLRYPIHTFPRPLIPQTTTFTMKKPKKKKRKEATTSDILHLMDALPFPIPIDIYTSLIKECTVSGDPETAIELYTHISKSGIKPPLPFLNRILIMFVSCGLLENARHMFDKMRVRDFNSWATLFVAYYDNADYEEAKAVFVNMLGQLGTLEFPPWIWACLLRACACTLDIPLGLQVHGWLLKLGTCDHVLLSSSLINFYGRFTSLEDASAIFNGVSRHNTLTWTAKIISGCRESHFSEAFGDFREMGMRGVKKDCFTFSSVLKACGKMLNQERCGEQVHADAIKLGLVSDHYVQCSLIAMYGRCGFLRDAKQVFEMIREEKKVDCWNAMLSGYTRNGFYIEAVKFLYQMQAAGMQPRESLLKKLRIACGSTQT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03248 416 Pfam Pentatricopeptide repeat domain 82 140 IPR002885 -
Vimu7g03248 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Vimu7g03248 416 NCBIfam pentatricopeptide repeat 96 127 IPR002885 -
Vimu7g03248 416 NCBIfam pentatricopeptide repeat 368 399 IPR002885 -
Vimu7g03248 416 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 262 404 IPR046960 GO:0003723|GO:0009451
Vimu7g03248 416 Pfam PPR repeat 339 363 IPR002885 -
Vimu7g03248 416 Pfam PPR repeat 368 396 IPR002885 -
Vimu7g03248 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vimu7g03248 416 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 317 416 - -
Vimu7g03248 416 Gene3D Tetratricopeptide repeat domain 68 210 IPR011990 GO:0005515
Vimu7g03248 416 Gene3D Tetratricopeptide repeat domain 269 416 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03248 Vimu-Chr7 27492296 27493704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03248 184 416 Glycoside Hydrolase AT3G49170 24.597 8.87e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03248 - - gmx:100778405 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03248 7 27492296 27493704 Vimu7g03248 7 27492296 27493704 ECH