Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03217 ATGAAATTTAGAATTTGCCCTAATAATCATAGCTGGAAGAAACTACTAACGGAGGCGCGAAACTTGATCGGTGTTGGCTACGCTTCTGCCGCCATGGGTGACATTCAGATCCATAAGACCAAACTCTGCATCATCGGAAGCGGTCCCGCCGCCCATACTGCCGCCGTCTACGCCGCTCGTGCTGAGCTCAAGCCGGTCCTCTTTGAAGGATGGATGGCGAACGACATCGCCCCCGGCGGCCAGCTCACCACCACAACTGACGTTGAGAACTTTCCCGGCTTCCCCGACGGCATACTCGGCGGACAGCTCATGGAGCGCTGCCGGGAGCAGTCGCTGCGCTTCGGTACCGAAATCCACACCGAGACCGTCTCCAAGGTCGATTTCTCTAACCGTCCTTTTAGGGTTTTTACTGATTCCCGCACTGTCGAGGCCGACTCCGTCATCGTCGCCACCGGCGCCGTCGCCAAGCGCCTTCCGTTCCCCGGCTCTGGCGACGGCCCTGACGGCTACTGGAATCGCGGGATCTCCGCGTGTGCCGTCTGCGACGGCGCCGCCCCAATTTTCCGGAACAAGCCCCTAGCGGTGATTGGTGGCGGGGACTCGGCCATGGAGGAGGCGACGTTCCTTACTAAGTACGGTTCCGAGGTGTACATAATTCATCGGAGGGACACGTTCAGGGCCTCGAAGATTATGCAGAGCAAGGTGATGAATAATAGCAAGATCAAGGTGATCTGGAACTCGGTGGTGCTTGAAGCCTATGGGGGCGGAGATAACAAGAGGGTGCTTGGGGGACTGAAGGTGAAGAATGTGGTTACTGAGGAGGTGTCTGACTTGAAGGTATCTGGTTTGTTTTTCGCAATAGGGCACGAGCCTGCGACCAAGTTCTTGGACGGTCAGCTTGAACTGGATTCTGATGGCTACGTCGTTACCAAGCCTGGGACTACGAAGACCAGTGTTGAGGGAGTGTTTGCTGCTGGTGATGTTCAGGACAAGAAGTACAGGCAAGCTATTACTGCTGCTGGCTCTGGTATGTTATAG 1038 0.5607 MKFRICPNNHSWKKLLTEARNLIGVGYASAAMGDIQIHKTKLCIIGSGPAAHTAAVYAARAELKPVLFEGWMANDIAPGGQLTTTTDVENFPGFPDGILGGQLMERCREQSLRFGTEIHTETVSKVDFSNRPFRVFTDSRTVEADSVIVATGAVAKRLPFPGSGDGPDGYWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEATFLTKYGSEVYIIHRRDTFRASKIMQSKVMNNSKIKVIWNSVVLEAYGGGDNKRVLGGLKVKNVVTEEVSDLKVSGLFFAIGHEPATKFLDGQLELDSDGYVVTKPGTTKTSVEGVFAAGDVQDKKYRQAITAAGSGML 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03217 345 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-II active site. 178 200 IPR008255 GO:0016491
Vimu7g03217 345 PRINTS Pyridine nucleotide disulphide reductase class-II signature 41 63 - -
Vimu7g03217 345 PRINTS Pyridine nucleotide disulphide reductase class-II signature 171 183 - -
Vimu7g03217 345 PRINTS Pyridine nucleotide disulphide reductase class-II signature 240 256 - -
Vimu7g03217 345 PRINTS Pyridine nucleotide disulphide reductase class-II signature 100 110 - -
Vimu7g03217 345 PRINTS Pyridine nucleotide disulphide reductase class-II signature 79 94 - -
Vimu7g03217 345 PRINTS Pyridine nucleotide disulphide reductase class-II signature 317 335 - -
Vimu7g03217 345 PRINTS Pyridine nucleotide disulphide reductase class-II signature 188 212 - -
Vimu7g03217 345 PRINTS Pyridine nucleotide disulphide reductase class-II signature 145 153 - -
Vimu7g03217 345 PRINTS Pyridine nucleotide disulphide reductase class-II signature 282 303 - -
Vimu7g03217 345 FunFam Thioredoxin reductase 164 292 - -
Vimu7g03217 345 PRINTS FAD-dependent pyridine nucleotide reductase signature 307 329 - -
Vimu7g03217 345 PRINTS FAD-dependent pyridine nucleotide reductase signature 42 61 - -
Vimu7g03217 345 PRINTS FAD-dependent pyridine nucleotide reductase signature 192 210 - -
Vimu7g03217 345 PRINTS FAD-dependent pyridine nucleotide reductase signature 280 296 - -
Vimu7g03217 345 PRINTS FAD-dependent pyridine nucleotide reductase signature 144 162 - -
Vimu7g03217 345 SUPERFAMILY FAD/NAD(P)-binding domain 38 344 IPR036188 -
Vimu7g03217 345 Gene3D - 160 292 IPR036188 -
Vimu7g03217 345 Gene3D - 44 344 IPR036188 -
Vimu7g03217 345 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 39 342 - -
Vimu7g03217 345 Pfam Pyridine nucleotide-disulphide oxidoreductase 41 342 IPR023753 GO:0016491
Vimu7g03217 345 NCBIfam thioredoxin-disulfide reductase 41 344 IPR005982 GO:0004791|GO:0005737|GO:0019430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03217 Vimu-Chr7 27264274 27265311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03217 K00384 - gmx:100790557 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03217 7 27264274 27265311 Vimu7g03217 7 27264274 27265311 ECH
Vimu7g03217 7 27264274 27265311 Vimu7g03217 7 27264274 27265311 PCT