Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03192 ATGACCAGCATAAAGCCTTTGCAGGAAGCAGTACGAAGTTCACTGCGTTCTGGCATTTTCCTGTTCGACTTCACGCGCGTCGTCGAGGAACTGGTTTTCAATAGCCTCGATGCTCGTGCCACAAAGGTATCAGTGTTTGTTGATGTTGGGAGATCCTATTTGAAAGTAGTTGATAATGGAAGTGGAATTACTCGAGATGGACTTGAGTTGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAATTTGGTTGACCTGAATGTTACGAGTGAGAATTTTGGTTTCCGTGGGGAGGCTTTGGCTTCCATTTCTGATGTCTCTGTGCTGGAAATTGTGACAAGAACACATGGAAGGCCAAATGGATATCAAAAAGTGTTGAAGGGGTGCAAGTGTTTATATCTTGGCATTGATGATGATAGAAAGGAAGTGGGCACCACAGTTGTCGTCCGTGATTTATTTTACAATCAACCAGTTCGAAGAAAATGCATACAGTCCAGTCCCAATAAGGTACTGCAATCAATCAAGAAGTGTGTAATGCGACTTGCACTTGTGCGTCCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATGAACTCTTCTGCACACAGTCTGCTTCTTCTCCTCTGTCACTTATAACCAGTGGCTTTGGGGTAGAGGTCACAAGCTCTCTTCACTATTTAGAAGTTGAGAATGATATCATAAAGCTTTCTGGATATGTATCCAGTCCTTGCAATACTTCAAACATCGAGGGTCCAATTCATAAGCTTCTGAGTCAACTGGCTGTCAGGTTTGAACATCTGAACTCATGGACTACTGATAATGAGTTCCGAAATAAGAAGAGAAGCAGGTGTCACATGGGTCTCTCTTATCTCTTGGATTTAAGTTGCCCCCGATCTATGTATGATTTGGCCTTTGAGCCATCAAAAACGTATGTTAAATTTAAGGATTGGACACCTATTCTAAACTTCATTGAGAAGGTCATCAAACAATTCTGGGAGGAAAACATAGCTTCTGTAGAACCCTCCAATCAATTTGCATACATGGTAGAAGATCAACAAGAAAAAGCATATGACAGTGTCATTTCAGACGTACCAGATATGTCAAGGTTTAGAAACCAAAATCGTAAGGGTTGCCTAGATCTATTCTTTTCTACTTCAGACAAGCTAATTGAAGATGACTATCATCAATCAAATAGGGAAGATGTTAGAACCTCCATTGATTACTTGGAGGCAGTGATGTTCAAAGAGAAACAAAGTATAGGAGACTCTCTTTTTCAGACTGGTTATTCTGGCAACTTATTGGATGATTCACATGCCAAGTGCGTATCCACTGTGACAAGAAGGCAGAACAGTTTGCTAATGCATGATAGCAGCAGTTCGTTGAGAGGAGATAACTTTTTTTATAGTGAAATACCGGCTATAGAAAGTTTAAATGATTGTGTACCTTTTGATGCACCGAGTTGTTCACGTGGAAGAAAATTCCATAAAGAAGCTGATGCGATCAGTGAAGCATTTCAAGATGATTTACATTATGACTGCAACGGGCACAGTTATGATGTAAATATTAATGGGGATTTGCAGAAACCTTTTCTAAAGGGATGCTCTACTCCAGGAAGTATCCTGCTTAAGAAAGATTTCTTTATAAATGATCGGTATGAAATCCAAAATGATAGCTTTTGTAGCAAGCAAAATACAGGGGGTGGTAAGGATTTAAATGATGATGTACCTTTTGATGAACCAAGTTCTTCACATGGAAGAAAATTCCATAAAGAAGCTGATGTGATCAGTGAGTCATTTCAAGATGATTTACGTTATAACTACAATGGGTACAGCTATGATGTAAATATTAATGGGGAGTTGCAGAAACCATTTCTAAAGGGATGCTCTGCACTAGGAAGTATCCTTTCTAAGAAAGATTTCTCTGGAAATGATAAACATGAACTGCAAACTGACAGCTTTTGTAGCAAGCAGAATACAGGGGAGGATTATAGAAGTGGTAAGGATTTATATGCCCATCCCTTTCCAGAAGTAAAAAAAAAATTAAAGATGTCTAAAACTTCCGATTTTCTTGAAAGACCATTGGCTGAAGAAAACTTTCTCCCTTCAGATTTATGCTACTCAGCATCACAAATAGGAAGCTCAGACGCAGATGATCGGTCATTAAATTTTGAATGGCATCCTCTCTACCTAAAACCATCATCTCAAGGACATACACTGGGTTTTTATCGTACAACTGATATCAAAGATGATATTGGAGGAGTATCTAGGTGCCTTAAATGGATCCATCATAAAAATCGTTTTGATGAAAAAGAAAATGAGTGCAATTTCAGCTACAATACGTCATGGAATACCAACCAGCATCACTGTGCATCAAGTTATGAAAATATTGGATTTAATTTTGATGTTGCTGGTGATTCTGGTGAAATATTCAACAAATTAGGTGACTGCCATGATTTCAGCGACATATATTCTACAAGGTCAGATATGTTAAACAAGAAGCTAGACTGGCTGTTGCCTGAGTCATGTGTTAAAAGATGCAAGATGCCTAACAAGAACAAAGGCAAAAAAGATAAATTTAGAAATTCAACTTTGGAGGAAAGTTGTGAAAGATCTAGAAGAAGCATTTCAGCTCCTCCTTTTTATAGAAGCAAAAGGAGGTTTTTCTCTTTAAATCATCCCTCAGAAATAAAAGCTAAAAGACAGATTGACCGAGTGTATAACCCCGGCTTCAATCATGAAGCACAAATTGGAACCAACGGTTTTGAATATGCAGAAGCTAGTAATTCTAAAGATCCTCAACAGCCTCTTGTTGTTCGTCATGAAAGCACTAAAGATCTCTTATTGCAAGAATTCAAAATCAATGTGAAACAAACTTCAGAGGTTCTGGATGCTATGCGGGTTAATGACATAACAGAGATTGAAGAACTTGACAGTTTCAACATTCAAAACTGTGCTTCATTTGGGGAATTGCTCTCTAAGGATGTCCAAGATCCCATAGATTATGGGACTAAGTGGAGGAATTGCTCACCTGATTTTACAAAGAATGATAGACCGGCTAATACTCCATGTCGAAACAATATACTTGACATTTCTTCCGGATTGCATCTTGCTGGAGATTCATTGATTCCAGAAACTATCAGTAAGAAATGTCTTGAGGATGCTAAAGTTTTGCATCAGGTGGATAAAAAATTCATTCCAGTTGTGGCTGGCAGAACCCTTGTCGTTATTGATCAGGTCTGTCTATTGCATATTATAGCGCATGCAGCAGATGAAAGAATCAGACTGGAAGAATTGCGTCAAAAGGTATTGTCGGGAGAAGCAAAAACAGTAACCTATCTGCATACTGAACTGGAACTGGTACTGCCAGAGATTGGTTATCAACTACTTCATAGTTATAGCGAACAGATCAAAGATTGGGGCTGGATATGTAACATCCATGCTAATAATTCCGAGACCTTTAGAAGGAATCTGGATATTATAAAAAGACAAGAAACAACGATCACACTTATTGCGGTACCGTGTATTTTAGGGGTCAAATTAAATGATGTTGATCTTTTAGAATTTCTTCAGCAGCTTGCTGACACTGATGGATCATCAACAATGCCACCCTCTGTCATACGATTGTTAAATTCGAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCATTGCTACCATCAGAATGTTCCCTTCTAGTTGAAGAGCTAAAGCATACATCGCTTTGTTTCCAATGTGCTCATGGGCGACCAACAACTGTTCCTCTAGTAAACTTGGAGGCACTGCATAGTCAGATAGCCAAGCTTCGACTGATGAACGAGTCTTCAAGTGAAAAGTGGCATGGATTACGTAAACATAAAGTATGCGTTGAACGTGTAGCACAACGTTTAAATTCTGCTATGGAAGATTAG 3915 0.3867 MTSIKPLQEAVRSSLRSGIFLFDFTRVVEELVFNSLDARATKVSVFVDVGRSYLKVVDNGSGITRDGLELVGERYATSKFLNLVDLNVTSENFGFRGEALASISDVSVLEIVTRTHGRPNGYQKVLKGCKCLYLGIDDDRKEVGTTVVVRDLFYNQPVRRKCIQSSPNKVLQSIKKCVMRLALVRPNISFKVVDIEREDELFCTQSASSPLSLITSGFGVEVTSSLHYLEVENDIIKLSGYVSSPCNTSNIEGPIHKLLSQLAVRFEHLNSWTTDNEFRNKKRSRCHMGLSYLLDLSCPRSMYDLAFEPSKTYVKFKDWTPILNFIEKVIKQFWEENIASVEPSNQFAYMVEDQQEKAYDSVISDVPDMSRFRNQNRKGCLDLFFSTSDKLIEDDYHQSNREDVRTSIDYLEAVMFKEKQSIGDSLFQTGYSGNLLDDSHAKCVSTVTRRQNSLLMHDSSSSLRGDNFFYSEIPAIESLNDCVPFDAPSCSRGRKFHKEADAISEAFQDDLHYDCNGHSYDVNINGDLQKPFLKGCSTPGSILLKKDFFINDRYEIQNDSFCSKQNTGGGKDLNDDVPFDEPSSSHGRKFHKEADVISESFQDDLRYNYNGYSYDVNINGELQKPFLKGCSALGSILSKKDFSGNDKHELQTDSFCSKQNTGEDYRSGKDLYAHPFPEVKKKLKMSKTSDFLERPLAEENFLPSDLCYSASQIGSSDADDRSLNFEWHPLYLKPSSQGHTLGFYRTTDIKDDIGGVSRCLKWIHHKNRFDEKENECNFSYNTSWNTNQHHCASSYENIGFNFDVAGDSGEIFNKLGDCHDFSDIYSTRSDMLNKKLDWLLPESCVKRCKMPNKNKGKKDKFRNSTLEESCERSRRSISAPPFYRSKRRFFSLNHPSEIKAKRQIDRVYNPGFNHEAQIGTNGFEYAEASNSKDPQQPLVVRHESTKDLLLQEFKINVKQTSEVLDAMRVNDITEIEELDSFNIQNCASFGELLSKDVQDPIDYGTKWRNCSPDFTKNDRPANTPCRNNILDISSGLHLAGDSLIPETISKKCLEDAKVLHQVDKKFIPVVAGRTLVVIDQVCLLHIIAHAADERIRLEELRQKVLSGEAKTVTYLHTELELVLPEIGYQLLHSYSEQIKDWGWICNIHANNSETFRRNLDIIKRQETTITLIAVPCILGVKLNDVDLLEFLQQLADTDGSSTMPPSVIRLLNSKACRGAIMFGDSLLPSECSLLVEELKHTSLCFQCAHGRPTTVPLVNLEALHSQIAKLRLMNESSSEKWHGLRKHKVCVERVAQRLNSAMED 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03192 1304 Pfam MutL C terminal dimerisation domain 1057 1226 IPR014790 GO:0005524|GO:0006298
Vimu7g03192 1304 Gene3D - 1061 1257 IPR042120 -
Vimu7g03192 1304 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Vimu7g03192 1304 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 23 201 IPR036890 -
Vimu7g03192 1304 SUPERFAMILY DNA mismatch repair protein MutL 1056 1257 IPR037198 -
Vimu7g03192 1304 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 120 - -
Vimu7g03192 1304 Gene3D - 2 209 IPR036890 -
Vimu7g03192 1304 SUPERFAMILY Ribosomal protein S5 domain 2-like 199 335 IPR020568 -
Vimu7g03192 1304 FunFam MUTL protein homolog 3 1110 1221 - -
Vimu7g03192 1304 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1262 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Vimu7g03192 1304 Gene3D - 220 341 IPR014721 -
Vimu7g03192 1304 FunFam DNA mismatch repair endonuclease MutL 1 214 - -
Vimu7g03192 1304 Gene3D - 1110 1221 IPR042121 -
Vimu7g03192 1304 SMART DNA_mis_repair_2 214 335 IPR013507 GO:0005524|GO:0006298|GO:0030983
Vimu7g03192 1304 CDD HATPase_MutL-MLH-PMS-like 11 198 - -
Vimu7g03192 1304 NCBIfam DNA mismatch repair endonuclease MutL 6 358 IPR002099 GO:0005524|GO:0006298|GO:0030983
Vimu7g03192 1304 SMART MutL_C_2 1058 1226 IPR014790 GO:0005524|GO:0006298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03192 K08739 - gmx:100788019 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03192 7 27001441 27011251 Vimu7g03192 7 27001441 27011251 ECH