Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03185 ATGGCCACTGTGAGTTCGACGGAGAAATTATCCAGCGATCGAATTCCATGGCACTTGAGAGAGAGAGATTCTTCAACCATGTTCGTGAAGAAACTCGTGGAGAAAGCATCCATAAAGAAGGCTGTTGGAAATTCAGTGGATGGGTTAAAAGCTAGTGATGTAGAACCACGTTTGGTGTTTCATCAAGGGGTACCATCTGGTGGTACCAAGTTTGCCTATGACAATATTCAGAAGATTCTTGCTCTTTCCACCAAGGATGGTCGGATTAAACTATTTGGGAAAGATAATGCCCAAGTCCTGCTTGAATCTAGAGAGCCGGTGCCTAGCAAATTTTTACAGGTTTGGGACATAGACAAGAAACTGCTCATTGACGTGTTCATTGTTAAAGAAGAAATCACCTGTTTTTCGGTTCTTCAACATAGCTTCTTCATGTATGTTGGATTTTCTAATGGTAATATTGCAGTTTTAAGTCTTGATCAACAACCATGGCATGTGGTTAGGATGAAATACTCCATACCCCTTTCAGCTTCCTATGGTGAGATCTGGTGTAATTTTTTGTCTTTGTCCTTAGTTCTCATAATTTTTAGAAATGGGCAAATAATATTGTGGGATATTCGAGAAAGCAGGTCCATCTTTAGAACTGGAGGAAGAATGTTACAAGCACGGTACAATGAAACAAAGAAAGTGTCTTCTGCATGTTGGGTATGTCCTTTCGGAAGTAAGGTGGTTGTAGGGTACAACAATGGAGAGCTCTTCATTTGGAGCATTCCTTCTCTAAACACAGGAAATAGTTTAGCAGCTGATTATAGCAGTCAAAATACTCCAATGTTCAAGTTTAACTTAGGATATAAATCAGACAAAACTTCAATAAGATCAGTAAAATGGATTTATGCAGAAGGAAGAGCTAGTCGACTATACGTTATGGGAGGTTCTGATTATGCCCCTTCAAACTTGTTGCAGGTAGTGTTGTTGAATGAGAATACAGAATCTCGCACAATTAAGATGGGGCTTCATTTGTCAGAAGGTTCTGTTGACATGCAGATCATATCAACCTCAAGCAAGCAGAGACAAAATTATTTCATTTTGCTTGGGAAATCAGGGAACGTATATCTGTATGATGATAATTTGATTGAAAGATATCTGTTGCAGAGCCAGTCTAAGTCCACTCCTTCACTGCCAAAGGAAGTGGTTGTGAAGTTACCATTGTCAGATTCAAGCATCACTACAGCAAAATTCGTCTCCAACAATCCCAGTGCGTTTAGTTCTGAAGACGAGCTGGTCAAGAATTATCCACCGCTTATTCCCATTGAAACAAATCTCAAAGATGGGATTAACTTCAGTGCTGCCAATTTCACTGGATTTTCGAACAAAAGAAACTTATACATAACTGGACACAGCAATGGAGCCATAACCTTTTGGGATGCGTCATGTCCCTTTTTCACCCCAATTTTGCAATTAAAGCAACAGGCTGAAAATGATGTTTCTTTAAGTGGTGTTCCCTTGACAGAATTATATTTTGATAGCAAGTCTCCACTCCTAATTTCTGGTGATCAAAGTGGGATGGTTCGTATCTACAGATTCAAACCTGAACCATATGCATTCAACAGCTTCATGTCTCTTACTGGAAATACAAAGAAAGGGACTGATCATGTAATCCACAGTATGAAACTCGTAAAAACTAGTGGTGCTGTAATTTGCATGAACATAGATCATAACTCAGGGCACCTTGCTGTTGGTTCTGACCAAGGAAACGTTTCAGTCATTAACATAGATGATCCATCTTTGTTATACCGGAAAAATATTTCAAGTGAAATTTCCTCCAGTATCGTCTCTTTGCAGTTTAAAACCTGCAGTTTGCGTGGTTTTGAGAAAAATATTTTACTAGTTGGAACAAAGGACTCATCCGTTCTAGCACTAGATAGTGAAACTGGAAATCCATTCAACACTGAAGCTATTCACCCTAAGAAGCCCTCTAAAGCCATATATATGCAAGTGTTGGATGGAGTAGGAGAACCAATCACAGGATCGGTTACAAAAGATGGCTTAGACTCAAGAGAAGGGAATCGTACTGAAGATGCAACAGCAAAGCAATTGTACATTTTGCTGTGTTCTGAGAAGGCTTTGTATGTCTATTCTTTTGTGCATGTTGTACAGGGAGTTAAAAAGGTGCTTTACAAGAAGAAATTTCATTCCTCTTCCTGTTGCTGGGCATCAACAATTTACAACCTCTCTGATATCAGTCTTCTTCTCCTTTTCACCAGTGGGAAAGTGGAATTAAGGTCTTTGCCAGCTTTATCTCTGATAGCGGAGACTTCAATTAGAGGTTTCACTTATTCACCACCCAAATTGAAATCATATTCTGATAGCCAGATATGTTGTTCACGCAAAGGAGATCTTGTTTTGGTGAATGGTGATCAGGAAATTTTTGTTGTTTCATTGTTGGCCCAGAGGAATATTTTCAGGCTTTTGGACTCTGTTAGCTGCATCTACAGAAAGGAAATAATGCTATCAGAAGAAGAGCTTGGTCCTAGCCCTGTAATCGATAAGGGAAAGAAAAAGGGTATACTCAGCTTCGCTATAAAAGATTTTACAAGTAGTAAAGAAAAGCATGGACCCCTAATGGGTAAAGAAGATCCCAAAGAAAACATACGGGAACTCTCAGCAATATTCTCAAATGCGAACTTTGCATGTTACGATAATGATGATAAACCAACAGTGGATGAAAGTGAGGTTGAATTAAACATAGATGACATTGACTTAGAGGATCATGAAGAAAAACGCAAAGAACAAAGCATATTAGGAGCTCTTAATAAGAAGAAATTGGTTGGAAAATTTCAGTCTCTGAAAGGAAGATTGAAAGAAATGAAGGGAAACTACCAGAAGGCATCAGATAAGGAAGGGCACCAGGAGGAAAAAGATGGTGCGCTGGATCAAATTAAGAAGAAATATGGATTTACTTCTTCTTCCAATGAAACAACCGCTGCTAAACAGGCACAAATCAAGCTTCATGAAAACACATGGAAATTGCAGGGTACCAACCTTCGTGCCAGAGAGATGCAAGATACAGCAAAATCATTTTCATCATTGGCAAAACAAGTGCTCCGAACTGCTGAGCAGGATAGACAAAGTTGA 3132 0.3914 MATVSSTEKLSSDRIPWHLRERDSSTMFVKKLVEKASIKKAVGNSVDGLKASDVEPRLVFHQGVPSGGTKFAYDNIQKILALSTKDGRIKLFGKDNAQVLLESREPVPSKFLQVWDIDKKLLIDVFIVKEEITCFSVLQHSFFMYVGFSNGNIAVLSLDQQPWHVVRMKYSIPLSASYGEIWCNFLSLSLVLIIFRNGQIILWDIRESRSIFRTGGRMLQARYNETKKVSSACWVCPFGSKVVVGYNNGELFIWSIPSLNTGNSLAADYSSQNTPMFKFNLGYKSDKTSIRSVKWIYAEGRASRLYVMGGSDYAPSNLLQVVLLNENTESRTIKMGLHLSEGSVDMQIISTSSKQRQNYFILLGKSGNVYLYDDNLIERYLLQSQSKSTPSLPKEVVVKLPLSDSSITTAKFVSNNPSAFSSEDELVKNYPPLIPIETNLKDGINFSAANFTGFSNKRNLYITGHSNGAITFWDASCPFFTPILQLKQQAENDVSLSGVPLTELYFDSKSPLLISGDQSGMVRIYRFKPEPYAFNSFMSLTGNTKKGTDHVIHSMKLVKTSGAVICMNIDHNSGHLAVGSDQGNVSVINIDDPSLLYRKNISSEISSSIVSLQFKTCSLRGFEKNILLVGTKDSSVLALDSETGNPFNTEAIHPKKPSKAIYMQVLDGVGEPITGSVTKDGLDSREGNRTEDATAKQLYILLCSEKALYVYSFVHVVQGVKKVLYKKKFHSSSCCWASTIYNLSDISLLLLFTSGKVELRSLPALSLIAETSIRGFTYSPPKLKSYSDSQICCSRKGDLVLVNGDQEIFVVSLLAQRNIFRLLDSVSCIYRKEIMLSEEELGPSPVIDKGKKKGILSFAIKDFTSSKEKHGPLMGKEDPKENIRELSAIFSNANFACYDNDDKPTVDESEVELNIDDIDLEDHEEKRKEQSILGALNKKKLVGKFQSLKGRLKEMKGNYQKASDKEGHQEEKDGALDQIKKKYGFTSSSNETTAAKQAQIKLHENTWKLQGTNLRAREMQDTAKSFSSLAKQVLRTAEQDRQS 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03185 1043 CDD R-SNARE_STXBP5_6 978 1035 - -
Vimu7g03185 1043 SUPERFAMILY WD40 repeat-like 454 814 IPR036322 GO:0005515
Vimu7g03185 1043 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 35 1036 - -
Vimu7g03185 1043 Gene3D - 434 665 IPR015943 GO:0005515
Vimu7g03185 1043 SMART WD40_4 487 526 IPR001680 GO:0005515
Vimu7g03185 1043 SMART WD40_4 548 589 IPR001680 GO:0005515
Vimu7g03185 1043 SMART WD40_4 119 157 IPR001680 GO:0005515
Vimu7g03185 1043 SMART WD40_4 216 255 IPR001680 GO:0005515
Vimu7g03185 1043 SMART WD40_4 393 474 IPR001680 GO:0005515
Vimu7g03185 1043 FunFam Syntaxin-binding protein 5 isoform A 187 429 - -
Vimu7g03185 1043 Gene3D - 14 428 IPR015943 GO:0005515
Vimu7g03185 1043 Pfam Lethal giant larvae(Lgl) like, C-terminal 553 819 IPR013905 -
Vimu7g03185 1043 SUPERFAMILY WD40 repeat-like 71 529 IPR036322 GO:0005515
Vimu7g03185 1043 Coils Coil 945 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03185 Vimu-Chr7 26959805 26972021 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03185 - - gmx:100782049 1683.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03185 7 26959805 26972021 Vimu7g03185 7 26959805 26972021 ECH
Vimu7g03185 7 26959805 26972021 Vimu7g03185 7 26959805 26972021 PCT