Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03182 ATGAGCGAATCCCAAGACCCGTTATCCTACCCTCCCATAGACCCCGTCAACTTCGATCTCATCATCGTCGGCACCGGCCTATCTGAATCTGTCGTCGCCGCCGCCGCATCAGCCGCCGGCAAAACTATCCTCCACCTCGATCCCAACTCCTTTTACGGCAGCCATTTCGCCTCTCTTTCCTTCCTCGACTTCACTTCCTATCTCACTTCCCCCAACCCTCTCCCCGCTGCCGTCACAACCACCGACTCCGTAGACGTTGTTGTCGATCTCCTCCACCAACCCATCTGCTCCGACGTGGAAATCTCATGCTATGATGAATACTCGTTCCTCTGCGAAAATTCGAGGAAATTCAACATCGATTTGGGAGGTCCGAGGGCGCTGTTCAGCGCGGACAGGACGATCGATCTGCTGTTGAAATCTGGCGCGGCGCAGTATTTGGAGTTCAAAGGAATCGATGAAAGCTTCGTGTACGAATCGAATGGGGGTTTGGCGAACGTGCCGGATTCTCGCGGAGCGATTTTCAGAGACAAGAAGCTTTCGCTGAAGGAGAAGAACCAGTTGATGAGGTTCTTCAAGTTGGTTCAGCAGCACTTGGATGATAATCAGGAGGAGAAAATATCGGAGGAGGATATGGAGATTCCTTTTGTTAGTTTCTTGGAGAAAATGAAGTTGCCGCCTAAGATAAAATCGTATTCACCATTTCTGTTTCTAGCGGAAATAGGACTGGGAAATTTAGGTGTTCTGCTGATTCTTTTGTATGCTATAGCTCTGGTAGATTATGATCAAGACAGTAACGAGGTTTGTAAAGATTTGCTCAAAACAAAAGTTGGAATAGATTGTTTAGCTCAATACAGCTCATCTGTTGGAAGGTTTCCTAATGCTCCTGGTGCGTTGCTTTATCCTATTTATGGTGAAGGAGAACTACCACAAGCCTTTTGTCGCCGTGCTGCTGTCAAAGGTTGCATTTATGTTCTAAGAATGCCAGTTGTTTCGCTGCTTATGGATAAGGCTACCGGGCTTTATAAAGGTGTTAGGTTAGCATCAGGTCAAGATTTATATAGCCAACAACTGATTCTGGATCCATCCTTCACTATTCCATCACCATTGTCTTTGTCTCCAAGAGATTTTCCTTGTGAAAGGCTCCAAATGTTGAGTCAGAGAGATATTAAAGGAATGGTGGCTAGGGGAATATGCATCACAAGAAGTTCAATAAAGCCAGATGTATCTAATTGCTCAGTGGTGTATCCTCCTAGATCTTTGTATCCCGAACAGACGACATCAATCAAATCTCTTCAGATAGGATCAAATCTTGCTGTTTGTCCTGAGGGAACTTTTATTTTATATTTTTCCACTTTGTGCAATAATGCCGATGAAGGAAAGAATCTACTAAAAGCAGCCATGAATGCTCTTCTCACATTGCCTGTATCCGGAAACACTGAAAGTATTTCAAGTGTTCAAAGTGACAGTGAGGATACTAAACCGATTGTGCTCTGGAGTGCATTGTATATTCAGAAATTAATTGTGAGTAATTTTGAATTGATCAGCTCCACTTCTACACCGGATGGAAATCTGAACTACAATGACCTTTTAGATGCAGCTGAGAAGCTATTTCGTCAGATGTACCCCAATGAAGAATTCTTTCCAAAGGCAACATCACCCGAAGATCCTACAGATGAGGATGATAATGGGTTAACTCTGGATAGCTAA 1707 0.4429 MSESQDPLSYPPIDPVNFDLIIVGTGLSESVVAAAASAAGKTILHLDPNSFYGSHFASLSFLDFTSYLTSPNPLPAAVTTTDSVDVVVDLLHQPICSDVEISCYDEYSFLCENSRKFNIDLGGPRALFSADRTIDLLLKSGAAQYLEFKGIDESFVYESNGGLANVPDSRGAIFRDKKLSLKEKNQLMRFFKLVQQHLDDNQEEKISEEDMEIPFVSFLEKMKLPPKIKSYSPFLFLAEIGLGNLGVLLILLYAIALVDYDQDSNEVCKDLLKTKVGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMPVVSLLMDKATGLYKGVRLASGQDLYSQQLILDPSFTIPSPLSLSPRDFPCERLQMLSQRDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPEQTTSIKSLQIGSNLAVCPEGTFILYFSTLCNNADEGKNLLKAAMNALLTLPVSGNTESISSVQSDSEDTKPIVLWSALYIQKLIVSNFELISSTSTPDGNLNYNDLLDAAEKLFRQMYPNEEFFPKATSPEDPTDEDDNGLTLDS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03182 568 Pfam GDP dissociation inhibitor 17 69 IPR018203 GO:0005092|GO:0007264
Vimu7g03182 568 Pfam GDP dissociation inhibitor 278 470 IPR018203 GO:0005092|GO:0007264
Vimu7g03182 568 Pfam GDP dissociation inhibitor 113 203 IPR018203 GO:0005092|GO:0007264
Vimu7g03182 568 SUPERFAMILY FAD/NAD(P)-binding domain 16 366 IPR036188 -
Vimu7g03182 568 Gene3D - 15 546 IPR036188 -
Vimu7g03182 568 PANTHER RAB GDP-DISSOCIATION INHIBITOR 14 551 IPR018203 GO:0005092|GO:0007264
Vimu7g03182 568 PRINTS Rab GDI/REP protein family signature 37 54 IPR018203 GO:0005092|GO:0007264
Vimu7g03182 568 PRINTS Rab GDI/REP protein family signature 19 37 IPR018203 GO:0005092|GO:0007264
Vimu7g03182 568 PRINTS Rab GDI/REP protein family signature 304 325 IPR018203 GO:0005092|GO:0007264
Vimu7g03182 568 PRINTS Rab GDI/REP protein family signature 133 149 IPR018203 GO:0005092|GO:0007264
Vimu7g03182 568 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 166 297 - -
Vimu7g03182 568 SUPERFAMILY FAD-linked reductases, C-terminal domain 390 509 - -
Vimu7g03182 568 MobiDBLite consensus disorder prediction 546 568 - -
Vimu7g03182 568 PIRSF Rab_ger_ger_transf_A_euk 1 93 IPR001738 GO:0005968|GO:0006886|GO:0018344
Vimu7g03182 568 PIRSF Rab_ger_ger_transf_A_euk 96 567 IPR001738 GO:0005968|GO:0006886|GO:0018344
Vimu7g03182 568 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 94 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03182 Vimu-Chr7 26946695 26951466 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03182 K23460 - gmx:100795946 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03182 7 26946695 26951466 Vimu7g03182 7 26946695 26951466 ECH