Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03165 ATGGCGGTTCCATTCAGAATGAACCATAACAAACATGACCTGCTTGTTCGTTTGAAGATTTTCGTCAACTCTCAGAACTTCCACTCACATGCTCCCAAACCGGCCAAACAACCAAAACAAGATAGACAGTCTCCAAAAGAAGAATTGGACTACTCTATTTGCGGAGATCGCATAGGCATCTCAGAATGGAAGACTTTGGATGCAGAGAAGCTTGGTGTAACTAGTTCTATGATTTCACACTCATCTATGTTTGTCCTGAAACTTCTTCGGAGCAAAGGATTTGAGTCCTACTTAGTAGGTGGGTGCGTGAGAGATCTAATACTGAATAGAATTCCAAAAGATTTTGATGTCATCACCACAGCAAAGCTTATGCAGGTGAAAAATCATTTTCGTCGTTCAGTTCGTGCTGAAATAGTTGGCCGTCGTTTTCCAATATGCTTGGTTCATATTAAAGGTTCTGTAGTTGAGGTAACTAGTTTTGAGACAGTGGCACGAACTTCCAATGCGAAGGAACAATTTTTGTACTCTCAGCTGCCCAAATGCAGTAATAAAAAAGACTTGTTTCGGTGCAAAAACTCCTTGCGTAGAGACTTCACAATTAATAGTTTATTTTATGACCCCTTTGCCAATAAAATCTACGATTATACCAATGGAATGGCAGATTTGAGGACTTTAAAGCTAGAAACTGTTACCCCTGCTCAGTTGTCCTTCAAAGAAGATCCTGGAAGAATTTTGCGTGGCTTCAGACTTGCAGCTCGGCTAGGTTTATCATTATCAAGGGAGATTGAGGCTGCAATTTGGGCATATTCTTCACTAGTTATGAACTTGGACAAGAATAAAATTATGATTGAATTGAACTATATGCTATCTTATGGAGCTGCTGAACCATCTCTGCGTCTACTTTGGAAATTCAAATTGCTTAAATTTTTACTTCCTTTACATGCAGCATATCTAGATGAACAGGCTATTGAAGATGATCAAGCTTCCAATCTGTTGTTAAAGTTATTCTTTCATCTGGATAAGTTGCTTGCTTGCGATCGACCTTGTGATTGTACTCTGTGGATTGGATTGCTTGCATTTCACCTGGCATTAGTAAATGATCCTCAAGATGCTATAGTGGTGTGGACTTTTGCATCTGTTCTACATCATGGAGAGTGGAAAGAAGGTGTTAAATTTGCTAAAGAACAGGCCAGAATGAGTGTTAATTTTGTACCTGAAATAAGAAAGTCTAATATATACAAATCAGATGATGAAATTGCAATAGCAGTTACTAAATTGGCATCTTTGGTGATGCACTCGATACAGGCATTGGTTGATAAAAGTAGTCTTCGTCACTTCATGTCCATGCCTAGATACCCATCTTCTCCACAATCTGACATGGTATTTGTATCCGGGAAAGCAGGGAAACGTGCTCATACAATTTTCCAAATGCTGGCCAATGATGTTAAATTTTACAAGAGTGGAAGAAGAAAAAAATTGAAGATAAATTATGACATGCTTGGGAAGGGTGAACTTTCAGAGACTGGATTTGTTTTGGGCAAAATTGTACTTGAAACTATGAGTAGTGGAATTGTTGGGGATGGGGAGGATTCTGAAGCTGGACAATGTCACCTAAAGACCGAGGGCACTGAAGAAATTGGTCCATTTCCACATCCAGATCTAGTAAACCATCAAGTGGCGCCAATGGATGGTGATGGACAACTTTTATCAATACCAAATTCTGAGTGCGGGAAAGGAGAAAACAAGAAACGGAAACTGGTTGAGGATAGTTGTATTGCGAGGAAGACAATGGGCTCGGGGAACCATGAATTGTCTGAGGAATTTGAACGCAAGGAAAATAAAAAAGAGCAGCAGAAGCTAGTTAAGTTAAGCCAGAAGGTTGATCCATCCATGACGAAGTACTCCGCAGAAAAGAATATTTATCACAGAAAACAACTGATAAATAATAGGAAGAAAATAACCCGTGCCAATACATGTCTAGACCAAGCTATGCAAATGAAGACGGATGAACACAGCACATGTACGGCATCAAAATCTGCAGAATCGGATAATCATCAGGTGATAGCTCACAGCTTGGACATGGATGCAAAAACAACAAATAACAACTTGGACGTGGATGCAAAAACGCCAAATGAGTCGGACTTGAAGAAGAAAAAAAATATGCGTTTATCAATGATTGAACTTTTCAAGTGA 2193 0.3935 MAVPFRMNHNKHDLLVRLKIFVNSQNFHSHAPKPAKQPKQDRQSPKEELDYSICGDRIGISEWKTLDAEKLGVTSSMISHSSMFVLKLLRSKGFESYLVGGCVRDLILNRIPKDFDVITTAKLMQVKNHFRRSVRAEIVGRRFPICLVHIKGSVVEVTSFETVARTSNAKEQFLYSQLPKCSNKKDLFRCKNSLRRDFTINSLFYDPFANKIYDYTNGMADLRTLKLETVTPAQLSFKEDPGRILRGFRLAARLGLSLSREIEAAIWAYSSLVMNLDKNKIMIELNYMLSYGAAEPSLRLLWKFKLLKFLLPLHAAYLDEQAIEDDQASNLLLKLFFHLDKLLACDRPCDCTLWIGLLAFHLALVNDPQDAIVVWTFASVLHHGEWKEGVKFAKEQARMSVNFVPEIRKSNIYKSDDEIAIAVTKLASLVMHSIQALVDKSSLRHFMSMPRYPSSPQSDMVFVSGKAGKRAHTIFQMLANDVKFYKSGRRKKLKINYDMLGKGELSETGFVLGKIVLETMSSGIVGDGEDSEAGQCHLKTEGTEEIGPFPHPDLVNHQVAPMDGDGQLLSIPNSECGKGENKKRKLVEDSCIARKTMGSGNHELSEEFERKENKKEQQKLVKLSQKVDPSMTKYSAEKNIYHRKQLINNRKKITRANTCLDQAMQMKTDEHSTCTASKSAESDNHQVIAHSLDMDAKTTNNNLDVDAKTPNESDLKKKKNMRLSMIELFK 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03165 730 Gene3D Beta Polymerase, domain 2 63 224 IPR043519 -
Vimu7g03165 730 SUPERFAMILY Poly A polymerase C-terminal region-like 227 370 - -
Vimu7g03165 730 Pfam Probable RNA and SrmB- binding site of polymerase A 255 317 IPR032828 -
Vimu7g03165 730 Coils Coil 601 626 - -
Vimu7g03165 730 Gene3D - 227 477 - -
Vimu7g03165 730 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 28 537 - -
Vimu7g03165 730 MobiDBLite consensus disorder prediction 28 47 - -
Vimu7g03165 730 CDD NT_ClassII-CCAase 87 223 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vimu7g03165 730 Pfam Poly A polymerase head domain 97 226 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vimu7g03165 730 SUPERFAMILY Nucleotidyltransferase 71 223 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03165 Vimu-Chr7 26840063 26846660 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03165 - - gmx:100794882 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03165 7 26840063 26846660 Vimu7g03165 7 26840063 26846660 ECH