Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03152 ATGAAGTTGCACACTTTTGCCTTTGCATTAGCCTACATCCTAGTAATAACCTCATCGTACTTTCGTAGTGCTGTTGGTGATGATGTTGGAAGTGTAATCAGTGCTTCTCTATTCAATCAACTACTGAAACACCGAAATAATCAAGCTTGTGAGGGCAAGGGTTTCTACAACTACAACGCTTTCATCACCGCCGCTAGATCCTTCGGTGCTTTTGGAACCACCGGTGATTCCAACACTCGCAAGAGAGAGGTTGCAGCTTTCCTAGCTCAAACCTCTCATGAAACCACAGGAGGAGCACCAAGTTCCCCAGATGGACCATATGCATGGGGTTATTGCTTTGTGACAGAAAGAGATAAATCCAACAGATATTGTGATGGGAATGCACCATGTCCCGCAGGAAAATCGTACTATGGTCGAGGGCCTATTCAACTGACCCAGAACAGCAATTACAACTATAATCAAGCTGGAAGAGCCCTAGGAGTGGACTTGATAAACAACCCAGACTTGGTGGCAAGAGATGCAGTGCTTTCATTCAAGACAGCTCTGTGGTTCTGGATGACTCCACAGGGGAATAAACCCTCATGCCATGATGTGATCACTAACAGGTGGACCCCATCTGCGGTTGACAAGGCAGCTAATAGAGTCCCAGGTTTTGGTGTTATCACGAACATCATCAATGGTCGTGTTGAATGTGGGAAAGGTCCTACTCCAGCATCAGGTGATAGGATAGGGTTTTATAAGAGATACTGTTTCGTTTTTGGGCTCTCGTATGGTCCTAACTTGAATTGCAGAGACCAAAGACCTTTTGCTTTTGGTTAA 819 0.453 MKLHTFAFALAYILVITSSYFRSAVGDDVGSVISASLFNQLLKHRNNQACEGKGFYNYNAFITAARSFGAFGTTGDSNTRKREVAAFLAQTSHETTGGAPSSPDGPYAWGYCFVTERDKSNRYCDGNAPCPAGKSYYGRGPIQLTQNSNYNYNQAGRALGVDLINNPDLVARDAVLSFKTALWFWMTPQGNKPSCHDVITNRWTPSAVDKAANRVPGFGVITNIINGRVECGKGPTPASGDRIGFYKRYCFVFGLSYGPNLNCRDQRPFAFG 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03152 272 ProSitePatterns Chitinases family 19 signature 2. 176 186 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu7g03152 272 Pfam Chitinase class I 32 263 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vimu7g03152 272 PIRSF Endochitinase 8 270 IPR016283 GO:0004568|GO:0005975
Vimu7g03152 272 Gene3D Endochitinase, domain 2 115 172 - -
Vimu7g03152 272 CDD chitinase_GH19 33 263 - -
Vimu7g03152 272 SUPERFAMILY Lysozyme-like 28 269 IPR023346 -
Vimu7g03152 272 PANTHER CHITINASE-RELATED 26 267 - -
Vimu7g03152 272 Gene3D - 37 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03152 Vimu-Chr7 26677981 26678977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03152 28 272 Glycoside Hydrolase AT3G12500 61.538 3.23e-110 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03152 K20547 - gmx:100799642 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03152 7 26677981 26678977 Vimu7g03152 7 26677981 26678977 ECH
Vimu7g03152 7 26677981 26678977 Vimu7g03152 7 26677981 26678977 PCT