Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03093 GAAAATCTTGCGGGCCAAAAAGGTTTCTCCTTTCTCTCTCTCTCCCCTTCGTCAATGCCTTCTCCTCTCACTCTCACAACAGGGTCTGTCTCTTTCTTAGGGTTTCCTCATTTCTCCTTTTTCCATTCCCTGCTTTCTAACTCTCTATCTCTTTCCGCATTTTCGCAATTAGGATGTGTAATTGAGACGGAAGAAGAAAAAGAAGAAGAAATTGGAGGGGTTAAAAAGATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCCGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCGATTATGTGCCGACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGTAGCATTGTGAATCTGGGTTTGTGGGATACTGCCGGACAAGAGGACTACAACAGATTAAGACCTTTGAGTTACCGTGGGGCGGATGTTTTCATTCTGGCCTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCAGGTGTCCCCATAATTCTGGTTGGCACAAAGCTCGATCTTCGGGATGATAAGCAGTTCTGCCAAGACCATCCTGGTGCCGTGCCTATTACCGCAGCTCAGGGGGAAGAGCTTAGGAAGCTGATCAATGCACCAGCTTACATTGAATGCAGTTCAAAAACACAAGAGAACGTGAAGGCAGTGTTTGATGCGGCCATAAGAGTTGTCCTTCAACCACCTAAGCAGAAGAAAAAGAAGGGTAAAGGACAAAAGGCTTGTTCGATATTGTGA 822 0.4538 ENLAGQKGFSFLSLSPSSMPSPLTLTTGSVSFLGFPHFSFFHSLLSNSLSLSAFSQLGCVIETEEEKEEEIGGVKKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCQDHPGAVPITAAQGEELRKLINAPAYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKGKGQKACSIL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03093 273 SMART ras_sub_4 80 256 - -
Vimu7g03093 273 SMART rho_sub_3 85 256 IPR001806 GO:0003924|GO:0005525
Vimu7g03093 273 ProSiteProfiles small GTPase Rab1 family profile. 78 273 - -
Vimu7g03093 273 SMART rab_sub_5 83 256 - -
Vimu7g03093 273 Gene3D - 81 268 IPR027417 -
Vimu7g03093 273 PRINTS Transforming protein P21 ras signature 123 145 - -
Vimu7g03093 273 PRINTS Transforming protein P21 ras signature 106 122 - -
Vimu7g03093 273 PRINTS Transforming protein P21 ras signature 185 198 - -
Vimu7g03093 273 PRINTS Transforming protein P21 ras signature 83 104 - -
Vimu7g03093 273 PRINTS Transforming protein P21 ras signature 231 253 - -
Vimu7g03093 273 NCBIfam small GTP-binding protein domain 83 247 IPR005225 GO:0005525
Vimu7g03093 273 PANTHER RHO FAMILY GTPASE 80 270 IPR003578 GO:0005525|GO:0007264
Vimu7g03093 273 FunFam rac-like GTP-binding protein RHO1 81 268 - -
Vimu7g03093 273 Pfam Ras family 84 254 IPR001806 GO:0003924|GO:0005525
Vimu7g03093 273 CDD Rop_like 82 254 - -
Vimu7g03093 273 ProSiteProfiles small GTPase Ras family profile. 78 273 IPR001806 GO:0003924|GO:0005525
Vimu7g03093 273 ProSiteProfiles small GTPase Rho family profile. 76 253 - -
Vimu7g03093 273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 254 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03093 Vimu-Chr7 26229778 26232013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03093 72 256 EF-hand Containing Proteins AT5G27540 26.486 1.53e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03093 K04392 - gmx:100812451 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03093 7 26229778 26232013 Vimu7g03093 7 26229778 26232013 ECH
Vimu7g03093 7 26229778 26232013 Vimu7g03093 7 26229778 26232013 PCT