Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03082 TCACCGTGCTTCTTTCTTCAACAGGCAACGATGATCTGTATCGACAATTCGGAATGGATGCGTAACGGGGATTACGCTCCTTCTCGATTTCAAGCTCAAGCAGACGCTGTTAATCTTATTTGCGGTGCAAAGACTCAGTCTAATCCAGAAAATACAGTGGGAGTTCTCACAATGGCAGGGAAAGGCGTTCGAGTTTTGGTCACCCCTACCAGTGATCTGGGCAAGATCTTAGCCTGCATGCATGGACTAGAAACTGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAGCTGGCTCTTAAGCATCGGCAAAATAAAAAGCAACAGCAGAGAATTATTGTCTTTGCTGGAAGTCCTATCAAGCATGAAAAGAAGATGTTGGAGATGATAGGGAGAAAGTTGAAAAAGAACAGTGTTGCCCTTGATATTGTTAATTTTGGTGAAGAAGACGAGGGGAAGTCAGAAAAGCTGGAAGCACTCCTTGCAGCTGTTAACAATAATGATACCAGCCACATCGTACACGTTCCATCTGGTCCAAATGCCCTTTCTGATGTACTTATAAGTACACCTATTTTTACCGGTGATGGGGAAGGTGGAAGTGGTTTCGCTGCAGCTGCTGCTGCTGCAGCAGCTGGTGGTGTGTCTGGATTTGAATTTGGTGTGGATCCAAACTTGGATCCAGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGGCAGGAAGCAGCTGCAAAGAAGGCTGCAGAAGATGCTGCCAATCAAGAGAAGGGAGGTGAGCAGCAAGCCAGCTCACAAGATGCAACGATGACTGAGCATCCCAGTGGAGCAATGTCTGAAGTTGAGAACATGCCAAGTGATTTGATGGTTGGTTATGAGAATCTTAGGGACGATGAAAATGCCCTTCTACAGCAGGCACTAGCAATGTCAATGGACGATCCTGCCATTGGCCATGATGTAAAGGATACAGATATGTCAGAAGCATCTGCAAGTGATCCCGAGTTGGCTCTAGCTCTCCAGTTGTCAATAGCAGATAGTGCAAGGGATCAAACAAGTCAGTCGGACATGAGCAAATTGTTGGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCTCTTCCTGGGGTTGACCCAAATGATCCTTCTGTCAAGGATTTACTGGCGTCCATGCAAAATCAGTCTGAGGTTAGTCTTTCTACATGGAAAAAGATACATTCGATTTGA 1239 0.4576 SPCFFLQQATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLETGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPIKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKSEKLEALLAAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAANQEKGGEQQASSQDATMTEHPSGAMSEVENMPSDLMVGYENLRDDENALLQQALAMSMDDPAIGHDVKDTDMSEASASDPELALALQLSIADSARDQTSQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEVSLSTWKKIHSI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03082 412 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 9 396 IPR027040 GO:0006511|GO:0008540
Vimu7g03082 412 MobiDBLite consensus disorder prediction 262 278 - -
Vimu7g03082 412 Pfam von Willebrand factor type A domain 10 119 IPR002035 -
Vimu7g03082 412 Gene3D von Willebrand factor, type A domain 8 190 IPR036465 -
Vimu7g03082 412 Pfam Ubiquitin interaction motif 303 318 IPR003903 -
Vimu7g03082 412 Pfam Ubiquitin interaction motif 337 351 IPR003903 -
Vimu7g03082 412 Pfam Ubiquitin interaction motif 228 241 IPR003903 -
Vimu7g03082 412 CDD PSMD4_RAZUL 357 400 - -
Vimu7g03082 412 SMART VWA_4 7 179 IPR002035 -
Vimu7g03082 412 SUPERFAMILY vWA-like 9 179 IPR036465 -
Vimu7g03082 412 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 226 245 IPR003903 -
Vimu7g03082 412 Gene3D - 224 321 - -
Vimu7g03082 412 SMART uim 335 354 IPR003903 -
Vimu7g03082 412 SMART uim 303 322 IPR003903 -
Vimu7g03082 412 SMART uim 226 245 IPR003903 -
Vimu7g03082 412 Coils Coil 236 256 - -
Vimu7g03082 412 CDD VWA_26S_proteasome_subunit 7 192 - -
Vimu7g03082 412 MobiDBLite consensus disorder prediction 246 286 - -
Vimu7g03082 412 FunFam 26S proteasome regulatory subunit N10 224 317 - -
Vimu7g03082 412 ProSiteProfiles VWFA domain profile. 9 193 IPR002035 -
Vimu7g03082 412 FunFam 26S proteasome non-ATPase regulatory subunit 4 7 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03082 Vimu-Chr7 26156212 26159406 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03082 K03029 - gmx:100814594 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03082 7 26156212 26159406 Vimu7g03082 7 26156212 26159406 ECH
Vimu7g03082 7 26156212 26159406 Vimu7g03082 7 26156212 26159406 PCT