Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03041 ATGGTAAAGATTAAGTTAAATGGGTTTGTATGGGAATTGAAAAATGTCAGACATATTCCCGACCTGACGAAGAACTTAATCTCAGTGGGCCAGCTAGCCAGTGAAGGCTACACGACAATCTTTCACGGTGATGATTGGAAGATTTCAAAGGGTGCAATGACAATTGCTCGAGGCAAAAAGAGTGGTACTCTTTACAAGACAGCAGGAGCATGTCATTTGATTGCAGTTGCAGCAAATGAAAATCCCAACTTATGGCACCAAAGACTTGGGCATATGATTTATGCAGAGGTGGAAGATATCCTAGAAAGTCCTATATTGAGGACTCCTCAGCCAGAGGAATCAAATGAAGCAAACAATGAGCAATCAGAACCTCCTACTCCAACTCCTGTACTGAAAAGATCCTTTCGACCCCATGTGCCTAACAAGAGATACATAGACTACATGCACAGAGGCCTCTGTTTTTTCATTCCTTCATTCATTCATCTGTTCTCTCATCCTGCAATGGAGAAGGCCAACGCTGCTGTGGGATCCGGATCTGCCACCAACGGGGAGGTGTCTCCGCCGCCGCGGAAGGTGGCATTGATCACCGGAATCACCGGTCAGGATGGGTCTTACCTCACGGAATTCCTTCTTAACAAGGGCTACGAGGTGCACGGCCTGATCCGTCGCTCCTCCAACTTCAACACTCAGCGTATCGATCACATATACGTAGATCCCCACAACGCCCACAAGGCGCACATGAAGCTCCACTACGCGGATCTCTCGGACGCCTCCTCGCTCCGCCGCTGGCTCGATACCATCCTTCCCGACGAGGTCTACAACCTCGCCGCCCAGTCTCACGTTGCGGTCTCCTTCGAGATCCCTGACTACACAGCGGACGTCGTCGCCACCGGCGCCCTCCGCCTCCTTGAGGCCGTCCGCTCCCACATCGCCGCCTCTGGCCGCTCCCACATCCGCTACTACCAGGCCGGGTCTTCCGAGATGTTCGGCTCCACCCCGCCGCCGCAGTCTGAAACCACCCCCTTCCACCCACGCTCCCCCTACGCCGCCTCCAAATGCGCTGCGCACTGGTACACTGTGAACTACCGTGAGGCCTATGGACTCTACGCCTGCAATGGCATTCTTTTCAACCACGAGTCCCCTCGCCGCGGCGAGAATTTCGTGACGCGCAAGATCACGCGGGCCGTGGGCCGGATCAAGGTCGGTCTCCAAAACAAGCTCTTTTTGGGGAACCTTCAGGCCTCCAGGGATTGGGGCTTCGCTGGGGACTATGTTGAGGCCATGTGGCTGATGCTGCAGCAGGAGAAGCCCGATGACTATGTTGTCGCCACCGAAGAGTCCCACACGGTTGAGGAGTTCTTGGAAGTGGCTTTCGGCTATGTGGGACTCAATTGGAGGGATCATGTGGTGATTGACAAGAGGTACTTCCGTCCTTCTGAGGTTGACAACCTCAAAGGGGACGCCTCTAAGGCCAAGAAGGTGCTTGGTTGGAAACCTAGAGTGGGGTTTGAGCAACTCGTTAAGATGATGGTTGACCAGGACATTGAGATGGCTAAGAAGGAGAAGGTTCTTGTTGATGCTGGCTACATTGATGCTCAGCAACAACCTTGA 1611 0.5345 MVKIKLNGFVWELKNVRHIPDLTKNLISVGQLASEGYTTIFHGDDWKISKGAMTIARGKKSGTLYKTAGACHLIAVAANENPNLWHQRLGHMIYAEVEDILESPILRTPQPEESNEANNEQSEPPTPTPVLKRSFRPHVPNKRYIDYMHRGLCFFIPSFIHLFSHPAMEKANAAVGSGSATNGEVSPPPRKVALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRIDHIYVDPHNAHKAHMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAASGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLYACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQNKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGLNWRDHVVIDKRYFRPSEVDNLKGDASKAKKVLGWKPRVGFEQLVKMMVDQDIEMAKKEKVLVDAGYIDAQQQP 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03041 536 Gene3D - 384 510 - -
Vimu7g03041 536 FunFam GDP-mannose 4,6-dehydratase 194 392 - -
Vimu7g03041 536 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 182 526 IPR006368 GO:0008446|GO:0019673
Vimu7g03041 536 MobiDBLite consensus disorder prediction 109 134 - -
Vimu7g03041 536 MobiDBLite consensus disorder prediction 109 128 - -
Vimu7g03041 536 CDD GDP_MD_SDR_e 192 516 - -
Vimu7g03041 536 Pfam GDP-mannose 4,6 dehydratase 194 510 IPR016040 -
Vimu7g03041 536 Hamap GDP-mannose 4,6-dehydratase [gmd]. 191 520 IPR006368 GO:0008446|GO:0019673
Vimu7g03041 536 Gene3D - 194 500 - -
Vimu7g03041 536 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 191 516 IPR036291 -
Vimu7g03041 536 NCBIfam GDP-mannose 4,6-dehydratase 191 517 IPR006368 GO:0008446|GO:0019673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03041 Vimu-Chr7 25617266 25624927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03041 194 376 Miscellaneous Gene Families AT4G12250 28.421 6.07e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03041 K01711 - gmx:100777692 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03041 7 25617266 25624927 Vimu7g03041 7 25617266 25624927 ECH