Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03022 ATGGGATCTCTCTGTGTTCCTCTATCGACGATCTTCTCAATTTGGTTTCTAGTATTACTGGGTGCTGAATCAACGACGCATTGGGAAGATGCAGAGGTTCTGAAGGAGCTAAAGCGAGGTTTGGAACCAGCTTCGGTCATCCCAGGCTCTTGCATCAGTTCCTGGGACTTCACCGTCGACCCCTGCGACAACCTATTCGGCCAGAAATTCACGTGCGGCTTCAGATGCGACCTTGTCGTTTCCGGCCTCAGTCGAGTCACGGAACTTGCGCTGGACCAAGCGGGTTATGTTGGCTCTCTCACCTTCACGTGGAACCTTCCCTTTCTACAAACACTCGATCTCTCCAAGAACCAATTCTCCGCCCAAATTCCCGATTCCTTTTCGAACCTAACTCGCCTCCGCCGACTCAGTCTCTCGTCGAACTCCTTCTCCGGTGAGATACCCTCTTCCCTCGGCACACTCCCCACCCTCGAAGAGCTTTACCTCGACAACAACAACCTAACAGGAGCAATCCCACAAGGCTTCCACAACCTTATAAGACTCGAACTCCAGTCCAACAAACTCAACACCTATCTATCCAACTTGGACTCCTTCACAAACCTTAAATACCTCGATCTCAGCGATAACTCCATCGCCGGAGTGTTGCCGGCCTCGCTTCCTGTTTCGCTGGTTCAGATATCCATTCGGAACAACAATTTAAGTGGTGTCTTGTCGAGTGAAAGCTTCAGGAATTTGACGAGGTTGCAGGTGGTGGATTTCAGCTCCAACCGAATCAGCGGTTCCATTCCTTCGGTTTTCTTCGAGCTTCCGTCGTTGCAGCAGTTGACGCTGTCCTTCAACGAGTTCACGAAGGTCGAAGCACCTTATAAGGGAGTGGAGTCCCGGAGCGGGCTTATCGCGGTTGAATTAAGCAACAACAAGCTGGAGGGGTTTTTGCCGTGGTTCATGGCGATGATGCCGAAGTTATCGTCGTTGTCGTTGGAGAATAACCAGTTCACAGGGCGAATAGCGACCCAGTTTGCGGTGAAAACGGTGTCTCCCGAAACGGGAGTGTCTGAGTTGGGGAGGCTTCTGTTGGGGGGGAATTACTTGGTAGGAGGGATTCCTCGACCCTTGTTGACGCTGAAACGCGATTCTGCGAACGTGAGATTAGTTGATAACTGCTTGTACAGGTGCCCTCACAGTTTCTTCTTCTGCCAAGGTGGACAACAGAAGTCATTGACACAGTGTAACAGATTTGTCTCAACCAGTCAATAA 1257 0.5084 MGSLCVPLSTIFSIWFLVLLGAESTTHWEDAEVLKELKRGLEPASVIPGSCISSWDFTVDPCDNLFGQKFTCGFRCDLVVSGLSRVTELALDQAGYVGSLTFTWNLPFLQTLDLSKNQFSAQIPDSFSNLTRLRRLSLSSNSFSGEIPSSLGTLPTLEELYLDNNNLTGAIPQGFHNLIRLELQSNKLNTYLSNLDSFTNLKYLDLSDNSIAGVLPASLPVSLVQISIRNNNLSGVLSSESFRNLTRLQVVDFSSNRISGSIPSVFFELPSLQQLTLSFNEFTKVEAPYKGVESRSGLIAVELSNNKLEGFLPWFMAMMPKLSSLSLENNQFTGRIATQFAVKTVSPETGVSELGRLLLGGNYLVGGIPRPLLTLKRDSANVRLVDNCLYRCPHSFFFCQGGQQKSLTQCNRFVSTSQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03022 418 Pfam Leucine Rich Repeat 200 219 IPR001611 GO:0005515
Vimu7g03022 418 SUPERFAMILY L domain-like 46 388 - -
Vimu7g03022 418 Gene3D Ribonuclease Inhibitor 66 411 IPR032675 -
Vimu7g03022 418 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 102 192 - -
Vimu7g03022 418 Pfam Leucine rich repeat 223 281 IPR001611 GO:0005515
Vimu7g03022 418 Pfam Leucine rich repeat 109 167 IPR001611 GO:0005515
Vimu7g03022 418 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 16 411 - -
Vimu7g03022 418 SMART LRR_typ_2 130 152 IPR003591 -
Vimu7g03022 418 SMART LRR_typ_2 198 221 IPR003591 -
Vimu7g03022 418 SMART LRR_typ_2 154 177 IPR003591 -
Vimu7g03022 418 SMART LRR_typ_2 269 290 IPR003591 -
Vimu7g03022 418 SMART LRR_typ_2 245 268 IPR003591 -
Vimu7g03022 418 SMART LRR_typ_2 106 129 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03022 Vimu-Chr7 25448793 25450926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03022 238 396 Receptor kinase-like Gene Family AT3G28890 29.560 5.10e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03022 - - gmx:100811366 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03022 7 25448793 25450926 Vimu7g03022 7 25448793 25450926 ECH
Vimu7g03022 7 25448793 25450926 Vimu7g03022 7 25448793 25450926 PCT