Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03020 ATGACGAGTTCCTCTGGTGCCGCTCGCAAGAATCTCAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGATAATCTCCAGAGGTGGGTTGTTGAAGTCACTGGAGCTCCCGGGACACTTTACGCCAATGAGACCTACCAGCTTCAGGTCGATTTTCCCGAGAATTACCCTATGGAAGCTCCCCAGGTCATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGCAACGGCCATATTTGTTTAGATATATTGTATGATTCCTGGTCCCCTGCCATGACAGTTAGTTCTATCTGCATCAGTATTCTCTCAATGCTTTCTAGCTCGACCACAAAGCAACGCCCTGAAGATAATGATCGCTATGTAAAGAACTGCAGAAATGGCAGATCGCCTAAGGAGACTAGGTGGTGGTTCCATGATGACAAAGTATAA 486 0.4815 MTSSSGAARKNLSKIACNRLQKELVEWQVNPPTGFKHKVTDNLQRWVVEVTGAPGTLYANETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTTKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03020 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Vimu7g03020 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 15 139 - -
Vimu7g03020 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Vimu7g03020 161 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
Vimu7g03020 161 FunFam probable ubiquitin-conjugating enzyme E2 16 13 161 - -
Vimu7g03020 161 CDD UBCc 17 117 IPR000608 -
Vimu7g03020 161 SMART ubc_7 18 161 - -
Vimu7g03020 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Vimu7g03020 161 SUPERFAMILY UBC-like 5 126 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03020 Vimu-Chr7 25434101 25438038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03020 1 112 Miscellaneous Gene Families AT2G33770 27.826 3.24e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03020 K10688 - gmx:100305572 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03020 7 25434101 25438038 Vimu7g03020 7 25434101 25438038 ECH