Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03018 ATGGCTTCTTCACTGTCCTCCGTCATCAACCAACCTCACATAGCTCAGCGCTTCAAACTTCATCGCCCATCTTCTTTTGCCACTTTCACAATCTTCCACCACAAACGCAAACACAAACACCAGTACAATGTTTTTTCTCCACACCCATATACATCATCGCCACGCTCTCGCCCTCTCAATCTCATCATTTCTTCCAGAACCTTCTCTCATTCCACCACTCTCCGCCACCATTTCATCCCTCAAGCCACGCTCACTGCTTCCGAAGCTCAACCCCGCCTTGTGCCTGATGCTGAAGTTCCTCCCACTGGTCGAATATATCACGAGACTTATGGATGTCAAATGAACGTTAATGATATGGAGATCGTTCTTTCTATAATGAAAAAAGCCGGTTACAGTGAAGTTGTGAGTGTTCCCGAGAGTGCAGAAATAATATTCATCAATACTTGTGCCATTAGAGAAAACGCAGAACAGAAAGTATGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGCATTGGAAGAGCAATGTTGCTACTGGAAGAGCAGAGTCTCTGCGCCCTCCCAAAGTAGTGGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAGAAGATACTTGATTCAGATAAAATGGTTGATGTGGTATGCGGGCCTGATGCTTATAGGGATTTGCCGCGCTTACTTGAGGAGGTTGACTATGGTCAGAAAGGGATCAATACTCTCCTTTCACTTGAGGAGACTTATGCTGATATTAATCCTGTTAGAATCTCCAAGAACTCGGTTACTGCATTTGTTTCAGTGATGAGAGGTTGCAATAATATGTGCTCGTTTTGTATTGTTCCTTTCACCAGAGGCAGAGAGAGATCACGTTCGGTGGAGTCCATTGTGAGAGAGGTAGCGGAGCTTTGGAAAGAGGGTGTTAAGGAGGTAACGCTTCTTGGCCAAAATGTGAACAGCTACAACGATGCATCTGGGAGTGAGAGAGAGGTTGAATCGGGGTCCAATTGGCAACTTAGTGAAGGGTTTTCTAGTATGGCTAAGGTAAAAAAAATGGGCTTAAGATTTTCTGATCTACTGGATCGATTGTCGTCAGAATTTCCTGAGATGCGATTCAGATTCACTTCTCCACACCCAAAGGATTTTCCAGATGAGTTGCTTTATCTAATGCGAGACAGACATAATATATGCAAACTGATACATTTACCTGCACAAACTGGAAGTAGCAAAGTGCTGGAGAGAATGAGAAGAGGATATACCCGAGAGGCTTACTTGGAACTTGTGCAAAAGATCCGGAGTATTATTCCAGATGTGGCTTTGAGCAGTGATTTCATTTGTGGATTTTGTGGAGAAACAGAGGAGGAACACTCTGAGACGTTGACTCTGGTAAATGCTGTTAGTTATGATATGGCATTCATGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAATTATGTTGATGATGTTCCTGAGGAAGTTAAACAGAGGAGGCTGGCTGAACTAATTGAGACTTTCCGCGAGAGCACAGGGAAGTGTTTTGACTCTCAGATTGGAACCACACAGCTTGTGTTAGTGGAAGGACCCAATAAAAGAGCTCCACATACTGAGCTTATGGGCAAGAGTGACAAGGGTCATCGTGTGTTGTTTCTCAACATGCCAATCACAGATAGGGAAGACGTTAATACAAAGCGAAATCCTGTGGTTGGTGATTATGTTGAAGTCCGCATAACAAGATCTACTAGGGCATCACTCTTTGGTGAAGCACTTGCTATAACTAAACTAACCTCATTTTACCATAATCTGGATAAAGAAGCTGTTGCATGCAGCATGTAG 1836 0.4352 MASSLSSVINQPHIAQRFKLHRPSSFATFTIFHHKRKHKHQYNVFSPHPYTSSPRSRPLNLIISSRTFSHSTTLRHHFIPQATLTASEAQPRLVPDAEVPPTGRIYHETYGCQMNVNDMEIVLSIMKKAGYSEVVSVPESAEIIFINTCAIRENAEQKVWQRLNYFWFLKRHWKSNVATGRAESLRPPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRSVESIVREVAELWKEGVKEVTLLGQNVNSYNDASGSEREVESGSNWQLSEGFSSMAKVKKMGLRFSDLLDRLSSEFPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHLPAQTGSSKVLERMRRGYTREAYLELVQKIRSIIPDVALSSDFICGFCGETEEEHSETLTLVNAVSYDMAFMFAYSMREKTHAHRNYVDDVPEEVKQRRLAELIETFRESTGKCFDSQIGTTQLVLVEGPNKRAPHTELMGKSDKGHRVLFLNMPITDREDVNTKRNPVVGDYVEVRITRSTRASLFGEALAITKLTSFYHNLDKEAVACSM 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03018 611 Pfam Radical SAM superfamily 264 460 IPR007197 GO:0003824|GO:0051536
Vimu7g03018 611 SFLD CDK5RAP1 104 595 - -
Vimu7g03018 611 ProSitePatterns Methylthiotransferase radical SAM domain signature. 264 284 IPR020612 GO:0051539
Vimu7g03018 611 Pfam TRAM domain 515 590 IPR002792 -
Vimu7g03018 611 ProSiteProfiles Radical SAM core domain profile. 256 512 IPR007197 GO:0003824|GO:0051536
Vimu7g03018 611 SMART MiaB 260 501 IPR006638 GO:0003824|GO:0051536
Vimu7g03018 611 Pfam Uncharacterized protein family UPF0004 104 216 IPR013848 GO:0035596|GO:0051539
Vimu7g03018 611 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 103 232 IPR013848 GO:0035596|GO:0051539
Vimu7g03018 611 SUPERFAMILY Radical SAM enzymes 254 508 - -
Vimu7g03018 611 FunFam CDK5 regulatory subunit-associated protein 1 258 517 - -
Vimu7g03018 611 SFLD B12-binding domain containing 185 465 - -
Vimu7g03018 611 NCBIfam tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 105 588 - -
Vimu7g03018 611 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 38 604 - -
Vimu7g03018 611 ProSiteProfiles TRAM domain profile. 515 591 IPR002792 -
Vimu7g03018 611 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 103 591 IPR006463 GO:0006400|GO:0016740|GO:0051539
Vimu7g03018 611 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 104 586 IPR005839 GO:0006400|GO:0016740|GO:0051539
Vimu7g03018 611 SFLD Radical SAM 103 591 IPR007197 GO:0003824|GO:0051536
Vimu7g03018 611 SFLD Radical SAM 104 595 IPR007197 GO:0003824|GO:0051536
Vimu7g03018 611 CDD Radical_SAM 268 504 - -
Vimu7g03018 611 FunFam CDK5 regulatory subunit-associated protein 1 103 246 - -
Vimu7g03018 611 Gene3D - 104 246 IPR038135 -
Vimu7g03018 611 Gene3D tm_1862 like domain 258 516 IPR023404 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03018 Vimu-Chr7 25414340 25420799 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03018 - - gmx:100799544 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03018 7 25414340 25420799 Vimu7g03018 7 25414340 25420799 ECH