Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03012 ATGTTTGGGAATGAACGAAGCATGTTGAGGAGGGTGGTACCCGTAGCTGGGTTCATTTCTAGGAGGTTACAAGCAGTGCGGCAAGTGCATGGAGATGGAGATGGAGATGGAGACGGAGTTGGCGAAGAGCGTTTACATTTTCACAAGAGCAAAGGTCAACATATTCTCATCAACCCTAGAATTCTTGACACCATCGTTCGCAAATCCGCCATAAATCCAACCGACACTGTCCTCGAAATCGGACCTGGCACCGGCAACCTCACCCTCAAGCTTCTCGAAGCTGCGCACAAGGTAGTAGCATTCGAGATTGACCACCGCATGGTCGAGGTTCTCGAGAAGCGCGCTCTCAAACAAGGTCTCAACGATAAGCTCAGGGTAATTGTTGACTTACTCATACCGTACCTCACACCTCACCTGTTTGATGAAATGCCTGAGCCAAAAGTTATACAAAAAGATGCGATGAAAGTCCTGTTCCCGCGGTTTGATCTTGTTGTGGCCAACATTCCTTATCAGATATCTTCCCCTCTCGTGATCAAACTGGTGTATGGGCCGAGGCCGTTTCGGAGTGCCACTCTTCTTCTTCAGAAAGAGTTCGCCCGAAGGTTGTTGGCTAATCCCGGTGACTCTGAGTTTAGCCGGCTGTCGGTGAATGTGAAGCTTCTGGCTGATGTAGAGCTTGTGATGAATGTAAGCAAGAGGGACTTTCTCCCTTCCCCCAAAGTTGACTCTTCACTGGTCATAATCCGCCCTAAGCCTCAGGTTCCCAATGTGGATCTCCGTGAGTGGAGGGCTTTCACCTCGAATTGTTTTAATAACCGTTACAAGACACTGGGGGCAATTTTTAAGAATAAGAGGAAAGTCTTTGAGTTGCTCAAAATCTCTAATGAAAACGATAAAGCTTCTTCTCACAAGGGTGATGATGCTGAAGATGAAGGAGGCTTTACCTCGTTCAAGGAAAAGATTATTGGTGTGCTTAGAACGGGAGAGTTTGAAGATAAAAGGCCTGCAAAACTTTCTATCGAGGAGCTTCTGCATTTGCTCTCTTTGTTCAATCAAGCTGGCATTTATTTTGCAAACCATGGACATCTCAAGAGGGAAGATAGGTTTGATGCCGATGATTAG 1122 0.467 MFGNERSMLRRVVPVAGFISRRLQAVRQVHGDGDGDGDGVGEERLHFHKSKGQHILINPRILDTIVRKSAINPTDTVLEIGPGTGNLTLKLLEAAHKVVAFEIDHRMVEVLEKRALKQGLNDKLRVIVDLLIPYLTPHLFDEMPEPKVIQKDAMKVLFPRFDLVVANIPYQISSPLVIKLVYGPRPFRSATLLLQKEFARRLLANPGDSEFSRLSVNVKLLADVELVMNVSKRDFLPSPKVDSSLVIIRPKPQVPNVDLREWRAFTSNCFNNRYKTLGAIFKNKRKVFELLKISNENDKASSHKGDDAEDEGGFTSFKEKIIGVLRTGEFEDKRPAKLSIEELLHLLSLFNQAGIYFANHGHLKREDRFDADD 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03012 373 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 47 348 IPR011530 GO:0000179|GO:0006364
Vimu7g03012 373 Gene3D - 255 358 - -
Vimu7g03012 373 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 47 354 IPR001737 -
Vimu7g03012 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 44 352 IPR029063 -
Vimu7g03012 373 SMART rADcneu6 61 252 IPR020598 GO:0000154|GO:0000179|GO:0008649
Vimu7g03012 373 PANTHER DIMETHYLADENOSINE TRANSFERASE 44 352 IPR001737 -
Vimu7g03012 373 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 77 104 IPR020596 GO:0000154|GO:0000179|GO:0008649
Vimu7g03012 373 FunFam rRNA adenine N(6)-methyltransferase 47 253 - -
Vimu7g03012 373 Pfam Ribosomal RNA adenine dimethylase 46 295 IPR001737 -
Vimu7g03012 373 CDD AdoMet_MTases 76 177 - -
Vimu7g03012 373 Gene3D Vaccinia Virus protein VP39 47 253 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03012 Vimu-Chr7 25385779 25386948 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03012 K14191 - gmx:100790908 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03012 7 25385779 25386948 Vimu7g03012 7 25385779 25386948 ECH