Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02988 ATGAAGCATTTTGCCTTTGTGTTTCTTTTGGTCATTCTGGTCCCTCAGGAGTGTTTTCGTGCCACCGCGGAAGCAAGGGATGGTTTCGTCAGAACCAGAGGCATCCACTTCATGCTGAATGGATACCCTTACTATGCAAATGGCTTCAACGCCTACTGGTTAATGTACACAGCTTCAGACCCATCTCAGAGGTTCAAGGTTTCAAATGCCTTCCGAGAAGCAGCAAGTCACGGCCTTACTGTCGCTAGAACTTGGGCCTTCAGTGACGGTGGTTATAGACCTCTACAATATTCCCCTGGCTTCTATAATGAGCAAATGTTCACGGGGTTGGATTTCGTTATATCTGAGGCCAGAAAGTATGGAATTAAGCTGATACTGAGCTTGGTGAACAACTATGAGAACTTCGGAGGCAAGAAGCAGTACGTGAACTGGGCTAGAAGTCACGGACAGTATCTCACTTCAGATGATGATTTCTTCAGGAGCCCTGTTGTTAAGGGTTACTACATGAACCATGTCAGGACTGTTCTTAACAGATACAACAGATTTACTGGAATCCATTACAAAGATGACCCAACAATCATGGCGTGGGAGCTTATGAATGAGCCCAGGTGTACATCGGATCCTTCAGGAAGGACTATTCAGGCGTGGATCACGGAAATGGCTTGGTTTGTGAAATCGATAGACAGAAACCACTTATTGGAGGCAGGACTAGAAGGGTTTTACGGTCAATCAACACCACAGAGAAAAAGATTGAATCCTGGTTTCAACATAGGCACAGATTTCGTTGCAAATAACCGAATCCCAGCCATTGATTTTGCAACGGTCCACTGTTACCCCGACCAGTGGGTATCGAGCTCCAACATGCAGTATCAGCTTTCGTTCTTGAACAACTGGCTCAGTGCTCACTTCATGGATGCGCAATACGCAATAAGGAAACCGATTCTGGTAGGGGAGTTTGGGAAATCGTTCAGGGGTTCGGGGTACGAGAGGGATGAAGTGTTCAATGCAGTGTATTACAAAGTATACGCTTCGGCTAAGAGAGGAGGAGCAGCAGGGGGAGCGTTGTTCTGGCAGCTTCTGACCGGGGGAATGGAATCTTTCCAAGACGGATATGGGATCATGCTTGGCCAGAGTTCCTCTACGGCTGATCTCATTGCGCGCCAGTCTCGGAAGCTCTATCTGATTCGGAAGATCTTCGCGAGGGTTGCGAACATGCGGCGATGGCGAAGGGGAAGATCCAGCAAAGGGTTTTCTGGCTCTGGAGGTGGAAACGGAGGCAGCCAAGTCGGCAACTGA 1296 0.4815 MKHFAFVFLLVILVPQECFRATAEARDGFVRTRGIHFMLNGYPYYANGFNAYWLMYTASDPSQRFKVSNAFREAASHGLTVARTWAFSDGGYRPLQYSPGFYNEQMFTGLDFVISEARKYGIKLILSLVNNYENFGGKKQYVNWARSHGQYLTSDDDFFRSPVVKGYYMNHVRTVLNRYNRFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMAWFVKSIDRNHLLEAGLEGFYGQSTPQRKRLNPGFNIGTDFVANNRIPAIDFATVHCYPDQWVSSSNMQYQLSFLNNWLSAHFMDAQYAIRKPILVGEFGKSFRGSGYERDEVFNAVYYKVYASAKRGGAAGGALFWQLLTGGMESFQDGYGIMLGQSSSTADLIARQSRKLYLIRKIFARVANMRRWRRGRSSKGFSGSGGGNGGSQVGN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02988 431 Pfam Cellulase (glycosyl hydrolase family 5) 66 326 IPR001547 GO:0004553|GO:0071704
Vimu7g02988 431 MobiDBLite consensus disorder prediction 417 431 - -
Vimu7g02988 431 Gene3D Glycosidases 25 396 - -
Vimu7g02988 431 MobiDBLite consensus disorder prediction 411 431 - -
Vimu7g02988 431 SUPERFAMILY (Trans)glycosidases 29 383 IPR017853 -
Vimu7g02988 431 FunFam Mannan endo-1,4-beta-mannosidase 6 26 396 - -
Vimu7g02988 431 PANTHER - 4 412 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02988 Vimu-Chr7 25179204 25181180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02988 1 412 Glycoside Hydrolase AT5G66460 66.427 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02988 K19355 - gmx:100792073 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02988 7 25179204 25181180 Vimu7g02988 7 25179204 25181180 ECH