Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02944 ATGTGGCGGTGCATCGCACGGGGGCTTCGTGGGGCTGCTTCTACCACCAGATCCACCTCTAATCACCCTCTCGGATCTCACCTTTCTAGATTCTTCTCCAGTGGGGTTAACTCCTCGTATACCGTGGTGGATCATACTTATGATGCTGTTGTCGTAGGTGCGGGTGGCGCGGGATTGAGAGCTGCTATTGGACTTTCAGAACACGGGTTCAAGACTGCTTGTATCACCAAGCTTTTCCCCACTCGTTCACACACGGTTGCAGCTCAGGGTGGTATAAATGCTGCTTTGGGAAACATGACAGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGTGATCAGGATGCCATACAGTATATGTGCAGGGAAGCACCAAAAGCAGTCATCGAGCTAGAGAACTATGGTTTACCATTTTCCCGAACGGAGGATGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTGAACTATGGAAAAGGAGGTCAAGCATACCGCTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGTCAAGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCATTGGATCTCTTAATGAATAATGATGGCACTTGCCAGGGAGTAATTGCCTTGAACATGGAGGATGGAACACTTCATCGTTTCCAAGCTGCCTCAACAATTTTGGCCACAGGGGGTTATGGTAGAGCATACTTTTCTGCAACCTCAGCACACACATGTACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGGATCCCTCTTGAGGATTTGGAGTTTGTACAGTTTCACCCAACTGGTATATATGGAGCAGGTTGCCTTATAACAGAAGGCTCTCGTGGTGAAGGTGGAATTCTCAGGAACAGTGAGGGTGAGCGATTTATGGAACGATATGCTCCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCAAGATCAATGACAATGGAGATTAGGGAAGGTCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTCCATTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGAATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATCCCTGTTTTGCCAACAGTTCATTATAACATGGGCGGTATTCCCACAAACCATTATGGAGAGGTGGTTACCATTAAAGGTGACAATCCAGATTCAGTGATTCCTGGATTGATGGCCGCCGGGGAAACAGCCTGTGCATCAGTCCATGGTGCCAATAGGCTTGGTGCAAATTCTCTTCTGGATATTGTTGTTTTTGGAGAGAAACAAAAGCCTTTAGAGAAAGATGCTGGTCAGAGAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCATTGCCAACTTCAAAAATTCGGTTGAATATGCAACGAGTTATGCAAAGCAATGCTGCTGTGTTCCGTACACAGGAAACGTTAGAAGAAGGCTGTCAATTAATTGATAAAACGTGGGAGAGCTTCCGTGATGTTAAGGTCAAGGACCGCAGTTTAATATGGAACTCCGACTTGATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCTTGCATCACAATGTACTCTGCTGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAAGACTTCAAGGTTAGAGATGATGAGAACTGGATGAAACACACTGTGGGATACTGGGAAAACGAGAAGGTCCGGTTAGACTACAGGCCAGTGCATTTGAATACATTGGATGATGAGGTTGAATCATTCCCTCCCAAGGCTCGTGTCTATTGA 1854 0.4563 MWRCIARGLRGAASTTRSTSNHPLGSHLSRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNNDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGDNPDSVIPGLMAAGETACASVHGANRLGANSLLDIVVFGEKQKPLEKDAGQRTIAWLDKLRNSNGSLPTSKIRLNMQRVMQSNAAVFRTQETLEEGCQLIDKTWESFRDVKVKDRSLIWNSDLIETIELENLLINACITMYSAEARKESRGAHAREDFKVRDDENWMKHTVGYWENEKVRLDYRPVHLNTLDDEVESFPPKARVY 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02944 617 NCBIfam succinate dehydrogenase flavoprotein subunit 45 617 IPR011281 GO:0006099|GO:0016627|GO:0050660
Vimu7g02944 617 SUPERFAMILY FAD/NAD(P)-binding domain 39 452 IPR036188 -
Vimu7g02944 617 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 286 389 - -
Vimu7g02944 617 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 476 617 IPR037099 GO:0016491
Vimu7g02944 617 Gene3D succinate dehydrogenase protein domain 569 617 - -
Vimu7g02944 617 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 569 617 - -
Vimu7g02944 617 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 32 617 IPR030664 -
Vimu7g02944 617 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 276 394 IPR027477 -
Vimu7g02944 617 PIRSF SDHA_APRA_LASPO 37 606 - -
Vimu7g02944 617 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 456 572 - -
Vimu7g02944 617 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 82 91 IPR003952 GO:0016491
Vimu7g02944 617 Pfam FAD binding domain 48 444 IPR003953 -
Vimu7g02944 617 Gene3D - 457 568 - -
Vimu7g02944 617 Pfam Fumarate reductase flavoprotein C-term 486 617 IPR015939 GO:0016491
Vimu7g02944 617 Gene3D - 48 452 IPR036188 -
Vimu7g02944 617 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 36 262 - -
Vimu7g02944 617 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 48 617 IPR014006 GO:0016627|GO:0022900|GO:0050660
Vimu7g02944 617 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 286 389 IPR027477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02944 Vimu-Chr7 24804402 24811931 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02944 K00234 - gmx:100818379 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02944 7 24804402 24811931 Vimu7g02944 7 24804402 24811931 ECH
Vimu7g02944 7 24804402 24811931 Vimu7g02944 7 24804402 24811931 PCT