Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02906 ACTATGATTAAACTTTTTAAAGTAAAGGAGAAACAGAGAGAACTTGCAGAAAATGCAAGTGGTGGACCACCCGTTAAGAAGCAGAGTGCTGGCGAGTTGCGTCTTCACAAAGATATAAGTGAGCTGAATCTACCACAATCTTGTACCATACATTTCCCCAACGGAAAAGATGACCTGATGAACTTCGAAGTTTCAATTCGACCCGATGATGGATATTACGTATGTGGCACATTTTTGTTTTCCTTTCAAGTGTCTCCCATCTATCCACATGAAGCGCCAAAGGTTAAGTGCAAGACAAAGGTCTATCATCCAAATATTGACTTGGAAGGAAATGTTTGTCTAAACATCTTACGAGAAGATTGGAAACCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTCACGGAACCAAATTACGAGGATCCACTGAATCACGATGCCGCTGCTGTGTTGAGAGAGAACCCAAGGTTGTTTGAATCTAATGTTAGGAGGGCGATGTCAGGAGGGTATGTGGGGCAAACCTTTTTCCCTCGTTGTATTTAG 555 0.4144 TMIKLFKVKEKQRELAENASGGPPVKKQSAGELRLHKDISELNLPQSCTIHFPNGKDDLMNFEVSIRPDDGYYVCGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPRLFESNVRRAMSGGYVGQTFFPRCI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02906 184 CDD UBCc 34 168 IPR000608 -
Vimu7g02906 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 102 117 IPR023313 -
Vimu7g02906 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 30 175 IPR000608 -
Vimu7g02906 184 Gene3D Ubiquitin Conjugating Enzyme 26 184 IPR016135 -
Vimu7g02906 184 FunFam NEDD8-conjugating enzyme Ubc12 26 184 - -
Vimu7g02906 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 58 161 - -
Vimu7g02906 184 Pfam Ubiquitin-conjugating enzyme 34 169 IPR000608 -
Vimu7g02906 184 SUPERFAMILY UBC-like 23 182 IPR016135 -
Vimu7g02906 184 SMART ubc_7 33 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02906 Vimu-Chr7 24483005 24491656 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02906 K10579 - gmx:100783122 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02906 7 24483005 24491656 Vimu7g02906 7 24483005 24491656 ECH
Vimu7g02906 7 24483005 24491656 Vimu7g02906 7 24483005 24491656 PCT